Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPF86_RS07010 Genome accession   NZ_CP094091
Coordinates   1461900..1462163 (-) Length   87 a.a.
NCBI ID   WP_245064269.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe088     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1456900..1467163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF86_RS06995 (MPF86_06995) - 1457873..1459261 (-) 1389 WP_245065330.1 COG3014 family protein -
  MPF86_RS07005 (MPF86_07005) comB4 1459534..1461897 (-) 2364 WP_245064267.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF86_RS07010 (MPF86_07010) comB3 1461900..1462163 (-) 264 WP_245064269.1 competence protein ComB Machinery gene
  MPF86_RS07015 (MPF86_07015) comB2 1462163..1462444 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPF86_RS07020 (MPF86_07020) - 1462589..1463416 (-) 828 WP_245064271.1 DUF5718 family protein -
  MPF86_RS07025 (MPF86_07025) - 1463507..1464559 (-) 1053 WP_245064273.1 MnmA/TRMU family protein -
  MPF86_RS07030 (MPF86_07030) dnaG 1464556..1466235 (-) 1680 WP_245064275.1 DNA primase -
  MPF86_RS07035 (MPF86_07035) groES 1466510..1466866 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10060.17 Da        Isoelectric Point: 9.5507

>NTDB_id=666703 MPF86_RS07010 WP_245064269.1 1461900..1462163(-) (comB3) [Helicobacter pylori strain Hpfe088]
MIILSASVKNLREISVKEKFLWLNAKSYLISIFAPFILLPWIDLLSAFLLYLGFLVLFSVLEFFDEDIADIIIARSKIKT
KAKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666703 MPF86_RS07010 WP_245064269.1 1461900..1462163(-) (comB3) [Helicobacter pylori strain Hpfe088]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTATTTTCGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTGGGGT
TTTTAGTGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAGCCAAATGTTATAGAGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

94.253

100

0.943