Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPF90_RS07325 Genome accession   NZ_CP094090
Coordinates   1529590..1529871 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe089     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1524590..1534871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF90_RS07305 (MPF90_07305) - 1525320..1526660 (-) 1341 WP_180407172.1 hypothetical protein -
  MPF90_RS07315 (MPF90_07315) comB4 1526962..1529325 (-) 2364 WP_245022967.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF90_RS07320 (MPF90_07320) comB3 1529327..1529590 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  MPF90_RS07325 (MPF90_07325) comB2 1529590..1529871 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPF90_RS07330 (MPF90_07330) - 1530016..1530843 (-) 828 WP_245022968.1 DUF5718 family protein -
  MPF90_RS07335 (MPF90_07335) - 1530934..1531986 (-) 1053 WP_180473869.1 MnmA/TRMU family protein -
  MPF90_RS07340 (MPF90_07340) dnaG 1531983..1533662 (-) 1680 WP_245022969.1 DNA primase -
  MPF90_RS07345 (MPF90_07345) groES 1533937..1534293 (+) 357 WP_000671949.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666684 MPF90_RS07325 WP_001272686.1 1529590..1529871(-) (comB2) [Helicobacter pylori strain Hpfe089]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666684 MPF90_RS07325 WP_001272686.1 1529590..1529871(-) (comB2) [Helicobacter pylori strain Hpfe089]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGCTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAATGCTCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCTCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989