Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG40_RS00830 Genome accession   NZ_CP094088
Coordinates   180473..180757 (-) Length   94 a.a.
NCBI ID   WP_120961173.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe092     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 175473..185757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG40_RS00805 (MPG40_00805) - 176078..177247 (-) 1170 WP_245063901.1 VirB8/TrbF family protein -
  MPG40_RS00810 (MPG40_00810) - 177240..177374 (-) 135 WP_154409165.1 type IV secretion system protein VirB7 -
  MPG40_RS00815 (MPG40_00815) - 177371..179952 (-) 2582 Protein_159 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG40_RS00820 (MPG40_00820) - 179952..180188 (-) 237 WP_245063903.1 hypothetical protein -
  MPG40_RS00825 (MPG40_00825) comB3 180199..180462 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  MPG40_RS00830 (MPG40_00830) comB2 180473..180757 (-) 285 WP_120961173.1 TrbC/VirB2 family protein Machinery gene
  MPG40_RS00835 (MPG40_00835) - 180754..181233 (-) 480 WP_000571125.1 hypothetical protein -
  MPG40_RS00840 (MPG40_00840) - 181337..182125 (-) 789 WP_245063905.1 integrase -
  MPG40_RS00845 (MPG40_00845) - 182179..182397 (+) 219 Protein_165 MccB -
  MPG40_RS00850 (MPG40_00850) - 182450..182890 (+) 441 Protein_166 DNA/RNA non-specific endonuclease -
  MPG40_RS00855 (MPG40_00855) - 183150..184430 (-) 1281 WP_220908207.1 citrate synthase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10622.90 Da        Isoelectric Point: 10.9123

>NTDB_id=666644 MPG40_RS00830 WP_120961173.1 180473..180757(-) (comB2) [Helicobacter pylori strain Hpfe092]
MKKLSHSRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=666644 MPG40_RS00830 WP_120961173.1 180473..180757(-) (comB2) [Helicobacter pylori strain Hpfe092]
ATGAAAAAATTAAGTCATTCTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

56.044

96.809

0.543