Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG15_RS07225 Genome accession   NZ_CP094087
Coordinates   1509285..1509548 (-) Length   87 a.a.
NCBI ID   WP_033586650.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe093     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1504285..1514548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG15_RS07210 (MPG15_07210) - 1505259..1506689 (-) 1431 WP_162972184.1 COG3014 family protein -
  MPG15_RS07220 (MPG15_07220) comB4 1506920..1509283 (-) 2364 WP_245079361.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG15_RS07225 (MPG15_07225) comB3 1509285..1509548 (-) 264 WP_033586650.1 hypothetical protein Machinery gene
  MPG15_RS07230 (MPG15_07230) comB2 1509548..1509829 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG15_RS07235 (MPG15_07235) - 1509974..1510801 (-) 828 WP_245079362.1 DUF5718 family protein -
  MPG15_RS07240 (MPG15_07240) - 1510892..1511944 (-) 1053 WP_245079363.1 MnmA/TRMU family protein -
  MPG15_RS07245 (MPG15_07245) dnaG 1511941..1513620 (-) 1680 WP_245079364.1 DNA primase -
  MPG15_RS07250 (MPG15_07250) groES 1513895..1514251 (+) 357 WP_000671946.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10062.19 Da        Isoelectric Point: 9.5290

>NTDB_id=666638 MPG15_RS07225 WP_033586650.1 1509285..1509548(-) (comB3) [Helicobacter pylori strain Hpfe093]
MIILSASVKNLREISVKEKFLWLNAKSYLISIFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666638 MPG15_RS07225 WP_033586650.1 1509285..1509548(-) (comB3) [Helicobacter pylori strain Hpfe093]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTATTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966