Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG55_RS07110 Genome accession   NZ_CP094083
Coordinates   1467460..1467723 (-) Length   87 a.a.
NCBI ID   WP_245028443.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe096     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1462460..1472723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG55_RS07095 (MPG55_07095) - 1463434..1464774 (-) 1341 WP_245028439.1 hypothetical protein -
  MPG55_RS07105 (MPG55_07105) comB4 1465095..1467458 (-) 2364 WP_245028441.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG55_RS07110 (MPG55_07110) comB3 1467460..1467723 (-) 264 WP_245028443.1 competence protein ComB Machinery gene
  MPG55_RS07115 (MPG55_07115) comB2 1467723..1468004 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG55_RS07120 (MPG55_07120) - 1468149..1468976 (-) 828 WP_245028445.1 DUF5718 family protein -
  MPG55_RS07125 (MPG55_07125) - 1469067..1470119 (-) 1053 WP_245028447.1 MnmA/TRMU family protein -
  MPG55_RS07130 (MPG55_07130) dnaG 1470116..1471795 (-) 1680 WP_245028449.1 DNA primase -
  MPG55_RS07135 (MPG55_07135) groES 1472071..1472427 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10064.16 Da        Isoelectric Point: 9.5290

>NTDB_id=666597 MPG55_RS07110 WP_245028443.1 1467460..1467723(-) (comB3) [Helicobacter pylori strain Hpfe096]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSSFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666597 MPG55_RS07110 WP_245028443.1 1467460..1467723(-) (comB3) [Helicobacter pylori strain Hpfe096]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCTCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTAGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966