Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   OG844_RS45440 Genome accession   NZ_CP108788
Coordinates   9970519..9971016 (+) Length   165 a.a.
NCBI ID   WP_406387268.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00887     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9965519..9976016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG844_RS45420 (OG844_45405) - 9965581..9966234 (+) 654 WP_406387275.1 hypothetical protein -
  OG844_RS45425 (OG844_45410) - 9966834..9968006 (+) 1173 WP_406387273.1 exonuclease SbcCD subunit D -
  OG844_RS45430 (OG844_45415) - 9968006..9970177 (+) 2172 WP_406387271.1 AAA family ATPase -
  OG844_RS45435 (OG844_45420) - 9970171..9970479 (-) 309 WP_406387270.1 hypothetical protein -
  OG844_RS45440 (OG844_45425) sbcC 9970519..9971016 (+) 498 WP_406387268.1 SbcC/MukB-like Walker B domain-containing protein Machinery gene
  OG844_RS45445 (OG844_45430) - 9971084..9973351 (+) 2268 WP_406395929.1 Helicase associated domain protein -
  OG844_RS45450 (OG844_45435) - 9973383..9973631 (+) 249 WP_406387266.1 hypothetical protein -
  OG844_RS45455 (OG844_45440) - 9973955..9975757 (-) 1803 WP_406387264.1 sacsin N-terminal ATP-binding-like domain-containing protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17825.91 Da        Isoelectric Point: 5.2418

>NTDB_id=666597 OG844_RS45440 WP_406387268.1 9970519..9971016(+) (sbcC) [Streptomyces sp. NBC_00887]
MQLEAYVLAARLEEVVASANTRLTRMSENRYTLIHSDDRASHGARSGLGLKITDAWSGKDRDTDTLSGGESFFASLSLAL
GLADVVTAESGGQALDTLFIDEGFGTLDEDTLHNVLDVLDSLRAHDRTVGVISHVPELRRRITHRLHVRKAATGSTLAVI
TEAAE

Nucleotide


Download         Length: 498 bp        

>NTDB_id=666597 OG844_RS45440 WP_406387268.1 9970519..9971016(+) (sbcC) [Streptomyces sp. NBC_00887]
ATGCAACTGGAGGCCTACGTCCTGGCCGCCCGACTCGAAGAAGTCGTCGCATCAGCCAACACCCGACTCACCCGCATGTC
AGAAAACCGCTACACCCTCATCCACTCCGACGACCGGGCCTCCCACGGCGCCCGCTCCGGCCTAGGACTCAAGATCACCG
ACGCCTGGAGCGGGAAAGACCGCGACACCGACACCCTCTCCGGAGGCGAATCCTTCTTCGCCTCCCTCTCTCTCGCCCTC
GGACTCGCCGACGTCGTCACCGCCGAATCAGGCGGACAAGCCCTCGACACCCTCTTCATCGACGAAGGCTTCGGCACCCT
CGACGAAGACACCCTCCACAACGTCCTCGACGTCCTGGACTCCCTACGCGCCCACGACCGCACCGTCGGCGTCATCAGCC
ACGTCCCCGAACTACGCCGACGCATCACCCACCGCCTCCACGTCCGCAAAGCCGCCACCGGCTCCACCCTGGCCGTCATC
ACCGAAGCAGCCGAATAA

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

41.096

88.485

0.364