Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG63_RS07325 Genome accession   NZ_CP094082
Coordinates   1542877..1543140 (-) Length   87 a.a.
NCBI ID   WP_000584955.1    Uniprot ID   K7YLH7
Organism   Helicobacter pylori strain Hpfe097     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1537877..1548140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG63_RS07310 (MPG63_07310) - 1538869..1540299 (-) 1431 WP_245047144.1 COG3014 family protein -
  MPG63_RS07320 (MPG63_07320) comB4 1540512..1542875 (-) 2364 WP_245047146.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG63_RS07325 (MPG63_07325) comB3 1542877..1543140 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG63_RS07330 (MPG63_07330) comB2 1543140..1543421 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG63_RS07335 (MPG63_07335) - 1543566..1544393 (-) 828 WP_088296904.1 DUF5718 family protein -
  MPG63_RS07340 (MPG63_07340) - 1544485..1545537 (-) 1053 WP_220836693.1 MnmA/TRMU family protein -
  MPG63_RS07345 (MPG63_07345) dnaG 1545534..1547213 (-) 1680 WP_245047148.1 DNA primase -
  MPG63_RS07350 (MPG63_07350) groES 1547492..1547848 (+) 357 WP_000671946.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10048.12 Da        Isoelectric Point: 9.5507

>NTDB_id=666576 MPG63_RS07325 WP_000584955.1 1542877..1543140(-) (comB3) [Helicobacter pylori strain Hpfe097]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666576 MPG63_RS07325 WP_000584955.1 1542877..1543140(-) (comB3) [Helicobacter pylori strain Hpfe097]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTCGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGTGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAGTTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K7YLH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977