Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG63_RS03180 Genome accession   NZ_CP094082
Coordinates   657940..658224 (+) Length   94 a.a.
NCBI ID   WP_000736106.1    Uniprot ID   T0F3N0
Organism   Helicobacter pylori strain Hpfe097     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 652940..663224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG63_RS03155 (MPG63_03155) era 654186..655091 (+) 906 WP_245047902.1 GTPase Era -
  MPG63_RS03160 (MPG63_03160) csd6 655088..656080 (+) 993 WP_245047905.1 cell shape-determining L,D-carboxypeptidase Csd6 -
  MPG63_RS03165 (MPG63_03165) - 656150..657022 (-) 873 WP_342369235.1 tetratricopeptide repeat protein -
  MPG63_RS03170 (MPG63_03170) - 657022..657357 (+) 336 Protein_607 integrase -
  MPG63_RS03175 (MPG63_03175) - 657461..657943 (+) 483 WP_245047909.1 hypothetical protein -
  MPG63_RS03180 (MPG63_03180) comB2 657940..658224 (+) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  MPG63_RS03185 (MPG63_03185) comB3 658235..658498 (+) 264 WP_001177715.1 hypothetical protein Machinery gene
  MPG63_RS03190 (MPG63_03190) - 658509..658745 (+) 237 WP_245047911.1 hypothetical protein -
  MPG63_RS03195 (MPG63_03195) - 658745..661326 (+) 2582 Protein_612 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG63_RS03200 (MPG63_03200) - 661323..661457 (+) 135 WP_000738749.1 hypothetical protein -
  MPG63_RS03205 (MPG63_03205) - 661450..662619 (+) 1170 WP_245047913.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10752.11 Da        Isoelectric Point: 11.1589

>NTDB_id=666563 MPG63_RS03180 WP_000736106.1 657940..658224(+) (comB2) [Helicobacter pylori strain Hpfe097]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=666563 MPG63_RS03180 WP_000736106.1 657940..658224(+) (comB2) [Helicobacter pylori strain Hpfe097]
ATGAAAAAATTAAGGCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553