Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG38_RS07405 Genome accession   NZ_CP094080
Coordinates   1545427..1545690 (-) Length   87 a.a.
NCBI ID   WP_000584970.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe099     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1540427..1550690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG38_RS07390 (MPG38_07390) - 1541420..1542760 (-) 1341 WP_245101155.1 hypothetical protein -
  MPG38_RS07400 (MPG38_07400) comB4 1543062..1545425 (-) 2364 WP_245101158.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG38_RS07405 (MPG38_07405) comB3 1545427..1545690 (-) 264 WP_000584970.1 hypothetical protein Machinery gene
  MPG38_RS07410 (MPG38_07410) comB2 1545690..1545971 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG38_RS07415 (MPG38_07415) - 1546116..1546943 (-) 828 WP_245101159.1 DUF5718 family protein -
  MPG38_RS07420 (MPG38_07420) - 1547034..1548086 (-) 1053 WP_245101161.1 MnmA/TRMU family protein -
  MPG38_RS07425 (MPG38_07425) dnaG 1548083..1549762 (-) 1680 WP_245101163.1 DNA primase -
  MPG38_RS07430 (MPG38_07430) groES 1550035..1550391 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10048.16 Da        Isoelectric Point: 9.5290

>NTDB_id=666553 MPG38_RS07405 WP_000584970.1 1545427..1545690(-) (comB3) [Helicobacter pylori strain Hpfe099]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666553 MPG38_RS07405 WP_000584970.1 1545427..1545690(-) (comB3) [Helicobacter pylori strain Hpfe099]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977