Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPF83_RS07105 Genome accession   NZ_CP094078
Coordinates   1476927..1477208 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe101     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1471927..1482208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF83_RS07085 (MPF83_07085) - 1472639..1473979 (-) 1341 WP_041201979.1 hypothetical protein -
  MPF83_RS07095 (MPF83_07095) comB4 1474299..1476662 (-) 2364 WP_245053900.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF83_RS07100 (MPF83_07100) comB3 1476664..1476927 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPF83_RS07105 (MPF83_07105) comB2 1476927..1477208 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPF83_RS07110 (MPF83_07110) - 1477353..1478180 (-) 828 WP_245053902.1 DUF5718 family protein -
  MPF83_RS07115 (MPF83_07115) - 1478271..1479323 (-) 1053 WP_245053904.1 MnmA/TRMU family protein -
  MPF83_RS07120 (MPF83_07120) dnaG 1479320..1481002 (-) 1683 WP_245053906.1 DNA primase -
  MPF83_RS07125 (MPF83_07125) groES 1481275..1481631 (+) 357 WP_000671955.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666513 MPF83_RS07105 WP_001272686.1 1476927..1477208(-) (comB2) [Helicobacter pylori strain Hpfe101]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666513 MPF83_RS07105 WP_001272686.1 1476927..1477208(-) (comB2) [Helicobacter pylori strain Hpfe101]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGAAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989