Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG31_RS07180 Genome accession   NZ_CP094074
Coordinates   1501207..1501488 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe103     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1496207..1506488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG31_RS07160 (MPG31_07160) - 1496918..1498258 (-) 1341 WP_245015224.1 hypothetical protein -
  MPG31_RS07170 (MPG31_07170) comB4 1498579..1500942 (-) 2364 WP_245015225.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG31_RS07175 (MPG31_07175) comB3 1500944..1501207 (-) 264 WP_000584953.1 hypothetical protein Machinery gene
  MPG31_RS07180 (MPG31_07180) comB2 1501207..1501488 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG31_RS07185 (MPG31_07185) - 1501633..1502460 (-) 828 WP_154423423.1 DUF5718 family protein -
  MPG31_RS07190 (MPG31_07190) - 1502552..1503604 (-) 1053 WP_245015226.1 MnmA/TRMU family protein -
  MPG31_RS07195 (MPG31_07195) dnaG 1503601..1505280 (-) 1680 WP_245015227.1 DNA primase -
  MPG31_RS07200 (MPG31_07200) groES 1505556..1505912 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666471 MPG31_RS07180 WP_001272686.1 1501207..1501488(-) (comB2) [Helicobacter pylori strain Hpfe103]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666471 MPG31_RS07180 WP_001272686.1 1501207..1501488(-) (comB2) [Helicobacter pylori strain Hpfe103]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCAAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989