Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG46_RS07595 Genome accession   NZ_CP094066
Coordinates   1567965..1568228 (-) Length   87 a.a.
NCBI ID   WP_000584955.1    Uniprot ID   K7YLH7
Organism   Helicobacter pylori strain Hpfe110     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1562965..1573228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG46_RS07580 (MPG46_07580) - 1563939..1565279 (-) 1341 WP_245014328.1 hypothetical protein -
  MPG46_RS07590 (MPG46_07590) comB4 1565600..1567963 (-) 2364 WP_245014329.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG46_RS07595 (MPG46_07595) comB3 1567965..1568228 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG46_RS07600 (MPG46_07600) comB2 1568228..1568509 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG46_RS07605 (MPG46_07605) - 1568654..1569481 (-) 828 WP_021306480.1 DUF5718 family protein -
  MPG46_RS07610 (MPG46_07610) - 1569570..1570622 (-) 1053 WP_245014330.1 MnmA/TRMU family protein -
  MPG46_RS07615 (MPG46_07615) dnaG 1570619..1572298 (-) 1680 WP_245014331.1 DNA primase -
  MPG46_RS07620 (MPG46_07620) groES 1572575..1572931 (+) 357 WP_000671946.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10048.12 Da        Isoelectric Point: 9.5507

>NTDB_id=666366 MPG46_RS07595 WP_000584955.1 1567965..1568228(-) (comB3) [Helicobacter pylori strain Hpfe110]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666366 MPG46_RS07595 WP_000584955.1 1567965..1568228(-) (comB3) [Helicobacter pylori strain Hpfe110]
ATGATTATCCTGTCAGCGAGCGTGAAAAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCACCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTATATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K7YLH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977