Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG46_RS03115 Genome accession   NZ_CP094066
Coordinates   645112..645396 (-) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe110     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 640112..650396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG46_RS03085 (MPG46_03085) - 640369..641022 (-) 654 WP_154506233.1 IS607-like element IS607 family transposase -
  MPG46_RS03090 (MPG46_03090) - 641109..641885 (-) 777 Protein_593 VirB8/TrbF family protein -
  MPG46_RS03095 (MPG46_03095) - 641878..642012 (-) 135 WP_033586494.1 hypothetical protein -
  MPG46_RS03100 (MPG46_03100) - 642009..644591 (-) 2583 WP_245014677.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG46_RS03105 (MPG46_03105) - 644591..644827 (-) 237 WP_001183709.1 hypothetical protein -
  MPG46_RS03110 (MPG46_03110) comB3 644838..645101 (-) 264 WP_001177713.1 hypothetical protein Machinery gene
  MPG46_RS03115 (MPG46_03115) comB2 645112..645396 (-) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPG46_RS03120 (MPG46_03120) - 645393..645872 (-) 480 WP_245014678.1 hypothetical protein -
  MPG46_RS03125 (MPG46_03125) - 645976..646764 (-) 789 WP_245014679.1 integrase -
  MPG46_RS03130 (MPG46_03130) - 646817..647422 (-) 606 Protein_601 TIGR00366 family protein -
  MPG46_RS03135 (MPG46_03135) - 647441..648064 (-) 624 WP_001206235.1 3-oxoacid CoA-transferase subunit B -
  MPG46_RS03140 (MPG46_03140) - 648061..648759 (-) 699 WP_052920137.1 CoA transferase subunit A -
  MPG46_RS03145 (MPG46_03145) - 648770..649945 (-) 1176 WP_245014680.1 acetyl-CoA C-acetyltransferase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=666354 MPG46_RS03115 WP_000736478.1 645112..645396(-) (comB2) [Helicobacter pylori strain Hpfe110]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=666354 MPG46_RS03115 WP_000736478.1 645112..645396(-) (comB2) [Helicobacter pylori strain Hpfe110]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAACAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553