Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG221_RS26835 Genome accession   NZ_CP108765
Coordinates   6063320..6065053 (-) Length   577 a.a.
NCBI ID   WP_328376876.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00932     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6058320..6070053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG221_RS26825 (OG221_26820) - 6059960..6061180 (+) 1221 WP_405750975.1 RNA polymerase sigma factor -
  OG221_RS26830 (OG221_26825) rcrQ 6061323..6063320 (-) 1998 WP_328376877.1 ABC transporter ATP-binding protein Regulator
  OG221_RS26835 (OG221_26830) rcrP 6063320..6065053 (-) 1734 WP_328376876.1 ABC transporter ATP-binding protein Regulator
  OG221_RS26840 (OG221_26835) - 6065224..6066705 (-) 1482 WP_328376875.1 FGGY family carbohydrate kinase -
  OG221_RS26845 (OG221_26840) - 6066735..6067034 (-) 300 WP_328376874.1 YtxH domain-containing protein -
  OG221_RS26865 (OG221_26860) - 6068051..6068557 (+) 507 WP_405750969.1 GNAT family N-acetyltransferase -
  OG221_RS26870 (OG221_26865) - 6069075..6069422 (+) 348 Protein_5305 RNHCP domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62337.62 Da        Isoelectric Point: 6.7004

>NTDB_id=666342 OG221_RS26835 WP_328376876.1 6063320..6065053(-) (rcrP) [Streptomyces sp. NBC_00932]
MLISLLRTHLRPYKKPMALLALLQLLQTCATLYLPTLNADIIDNGVVKGDSGYILSYGGLMIAISVVQVICNGGAVYFGA
RTASALGRDIRAGVFDRVQSFSAREVGHFGAPSLITRTTNDVQQIQMLVLMSFTLMASAPIMCVGAIVLALGQDVPLSLV
LIAVVPVMLVLVSLIVRRMRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVKDAYEKERFKGANAELTDVSLGTARLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGAMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLSTDSSVVP
PMNPVTELARHGHLEIRGAGFKYPGAEASVLREVALEALPGETTAVIGSTGSGKSTLLGLVPRLFDATGGAVLVDGTDVR
ELDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDDELWHALDVAQAKGFVEALEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRTALRRETAESTVVIVAQRVSTIRDADRIVVMDEGQVVGTGRHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=666342 OG221_RS26835 WP_328376876.1 6063320..6065053(-) (rcrP) [Streptomyces sp. NBC_00932]
GTGCTCATATCGCTCCTGCGGACCCATTTGCGTCCGTACAAGAAACCCATGGCCCTGCTGGCGCTGCTTCAGCTGCTCCA
GACCTGCGCCACCCTCTATCTGCCGACGCTCAACGCGGACATCATCGACAACGGTGTCGTGAAGGGTGACTCGGGTTACA
TCCTGAGCTACGGCGGTCTCATGATCGCCATCAGCGTGGTTCAGGTGATCTGCAACGGGGGTGCCGTCTACTTCGGCGCC
CGGACCGCGTCCGCGCTCGGCCGGGACATCCGTGCCGGTGTCTTCGACCGGGTGCAGTCCTTCTCGGCCCGCGAGGTCGG
GCACTTCGGCGCCCCGTCCCTCATCACCCGGACGACCAATGACGTCCAGCAGATCCAGATGCTGGTCCTGATGTCGTTCA
CCCTGATGGCCTCGGCGCCGATCATGTGCGTGGGCGCCATCGTGCTGGCGCTCGGCCAGGACGTCCCGCTCTCGCTGGTC
CTGATCGCGGTCGTCCCGGTCATGCTCGTACTGGTCTCGCTGATCGTCCGGCGGATGCGGCCGCTCTTCCGGAAGATGCA
GGTCCGGCTCGACACGGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGAAGGACG
CGTACGAGAAGGAGCGCTTCAAGGGCGCCAACGCCGAACTGACCGACGTCTCGCTGGGGACCGCGCGGCTGATGGCCCTG
ATGTTCCCGACGGTGATGACCGTGGTGAATGTGTCGTCGATCGCGGTGGTCTGGTTCGGCGCGCACCGGATCGACAGCGG
CGCGATGCAGATCGGGGCGCTCACCGCGTTCCTCTCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGGATCCAGGAGGTCCTCTCCACCGACTCCAGCGTGGTGCCG
CCGATGAATCCCGTCACCGAGCTGGCCAGGCACGGCCATCTGGAGATCCGCGGGGCCGGGTTCAAGTACCCGGGCGCCGA
GGCGTCGGTGCTGCGGGAGGTCGCCCTGGAGGCGCTGCCCGGTGAGACGACCGCGGTGATCGGGTCGACCGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTACCCCGGCTGTTCGACGCCACGGGCGGCGCGGTGCTGGTGGACGGCACTGACGTACGG
GAACTCGACCCGGTCCTGCTGGCGAAGACCGTGTCCCTGGTGCCGCAGAAGCCGTATCTGTTCTCCGGGACCGTCGCGAC
GAACCTGCGGTACGGGAACCCGGACGCGACCGACGATGAGCTGTGGCACGCGCTGGATGTGGCGCAGGCCAAGGGGTTCG
TCGAGGCGCTCGAAGGCGGGCTGAACGCGCCGATCGCCCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGCCAGCGGCTG
GCGATCGCCAGGACGCTGGTCCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGACCGCGCTGCGGCGCGAGACGGCGGAGTCGACCGTGGTGATCGTCGCCCAGCGCGTCTCGACCATCC
GCGACGCGGACCGGATCGTCGTCATGGACGAGGGCCAGGTCGTCGGGACCGGCCGGCACCACGAGCTGATGGACGGCAAT
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.966

100

0.404