Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPF94_RS07075 Genome accession   NZ_CP094065
Coordinates   1462970..1463251 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe112     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1457970..1468251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF94_RS07055 (MPF94_07055) groES 1458549..1458905 (-) 357 WP_245022025.1 co-chaperone GroES -
  MPF94_RS07060 (MPF94_07060) dnaG 1459179..1460858 (+) 1680 WP_245022026.1 DNA primase -
  MPF94_RS07065 (MPF94_07065) - 1460855..1461907 (+) 1053 WP_000721160.1 MnmA/TRMU family protein -
  MPF94_RS07070 (MPF94_07070) - 1461998..1462825 (+) 828 WP_245022027.1 DUF5718 family protein -
  MPF94_RS07075 (MPF94_07075) comB2 1462970..1463251 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPF94_RS07080 (MPF94_07080) comB3 1463251..1463514 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPF94_RS07085 (MPF94_07085) comB4 1463516..1465879 (+) 2364 WP_245022028.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF94_RS07095 (MPF94_07095) - 1466110..1467540 (+) 1431 WP_162965351.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666339 MPF94_RS07075 WP_001272686.1 1462970..1463251(+) (comB2) [Helicobacter pylori strain Hpfe112]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666339 MPF94_RS07075 WP_001272686.1 1462970..1463251(+) (comB2) [Helicobacter pylori strain Hpfe112]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCCAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTTACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989