Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG37_RS07065 Genome accession   NZ_CP094064
Coordinates   1461201..1461482 (-) Length   93 a.a.
NCBI ID   WP_120901361.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe114     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1456201..1466482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG37_RS07045 (MPG37_07045) - 1456913..1458343 (-) 1431 WP_245050938.1 COG3014 family protein -
  MPG37_RS07055 (MPG37_07055) comB4 1458573..1460936 (-) 2364 WP_245050939.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG37_RS07060 (MPG37_07060) comB3 1460938..1461201 (-) 264 WP_000584970.1 hypothetical protein Machinery gene
  MPG37_RS07065 (MPG37_07065) comB2 1461201..1461482 (-) 282 WP_120901361.1 TrbC/VirB2 family protein Machinery gene
  MPG37_RS07070 (MPG37_07070) - 1461627..1462454 (-) 828 WP_245050941.1 DUF5718 family protein -
  MPG37_RS07075 (MPG37_07075) - 1462544..1463596 (-) 1053 WP_245050943.1 MnmA/TRMU family protein -
  MPG37_RS07080 (MPG37_07080) dnaG 1463593..1465272 (-) 1680 WP_245050945.1 DNA primase -
  MPG37_RS07085 (MPG37_07085) groES 1465547..1465909 (+) 363 WP_245050947.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10599.91 Da        Isoelectric Point: 9.1450

>NTDB_id=666322 MPG37_RS07065 WP_120901361.1 1461201..1461482(-) (comB2) [Helicobacter pylori strain Hpfe114]
MFAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666322 MPG37_RS07065 WP_120901361.1 1461201..1461482(-) (comB2) [Helicobacter pylori strain Hpfe114]
ATGTTCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978