Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG68_RS07345 Genome accession   NZ_CP094063
Coordinates   1522240..1522503 (-) Length   87 a.a.
NCBI ID   WP_000584971.1    Uniprot ID   A0A0L0QIL1
Organism   Helicobacter pylori strain Hpfe115     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1517240..1527503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG68_RS07330 (MPG68_07330) - 1518234..1519574 (-) 1341 WP_245026586.1 hypothetical protein -
  MPG68_RS07340 (MPG68_07340) comB4 1519875..1522238 (-) 2364 WP_245026588.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG68_RS07345 (MPG68_07345) comB3 1522240..1522503 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  MPG68_RS07350 (MPG68_07350) comB2 1522503..1522784 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG68_RS07355 (MPG68_07355) - 1522929..1523756 (-) 828 WP_154423423.1 DUF5718 family protein -
  MPG68_RS07360 (MPG68_07360) - 1523848..1524900 (-) 1053 WP_245026590.1 MnmA/TRMU family protein -
  MPG68_RS07365 (MPG68_07365) dnaG 1524897..1526576 (-) 1680 WP_245026592.1 DNA primase -
  MPG68_RS07370 (MPG68_07370) groES 1526849..1527205 (+) 357 WP_000671958.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10076.17 Da        Isoelectric Point: 9.5507

>NTDB_id=666301 MPG68_RS07345 WP_000584971.1 1522240..1522503(-) (comB3) [Helicobacter pylori strain Hpfe115]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666301 MPG68_RS07345 WP_000584971.1 1522240..1522503(-) (comB3) [Helicobacter pylori strain Hpfe115]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L0QIL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966