Detailed information NTG0666238

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG58_RS00695
• Genome accession: NZ_CP094061
• Coordinates: 149900..150955 (+)
• Length: 351 a.a.
• NCBI ID: WP_245012210.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe120
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144900..155955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG58_RS00665 (MPG58_00665)	-	145323..145736 (+)	414	WP_001023005.1	universal stress protein	-
MPG58_RS00670 (MPG58_00670)	-	145756..146031 (+)	276	WP_000784962.1	ATP-dependent Clp protease adaptor ClpS	-
MPG58_RS00675 (MPG58_00675)	-	146031..148253 (+)	2223	WP_245011873.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG58_RS00680 (MPG58_00680)	panD	148243..148593 (+)	351	WP_000142213.1	aspartate 1-decarboxylase	-
MPG58_RS00685 (MPG58_00685)	-	148604..148897 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG58_RS00690 (MPG58_00690)	-	148897..149892 (+)	996	WP_245012209.1	PDZ domain-containing protein	-
MPG58_RS00695 (MPG58_00695)	comB6	149900..150955 (+)	1056	WP_245012210.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG58_RS00700 (MPG58_00700)	comB7	150971..151096 (+)	126	WP_245011874.1	comB7 lipoprotein	Machinery gene
MPG58_RS00705 (MPG58_00705)	comB8	151093..151836 (+)	744	WP_245011875.1	virB8 family protein	Machinery gene
MPG58_RS00710 (MPG58_00710)	comB9	151836..152798 (+)	963	WP_245011876.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG58_RS00715 (MPG58_00715)	comB10	152791..153927 (+)	1137	WP_245011877.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG58_RS00720 (MPG58_00720)	-	153997..155400 (+)	1404	WP_245011878.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39921.90 Da
• Isoelectric Point: 8.8165

>NTDB_id=666238 MPG58_RS00695 WP_245012210.1 149900..150955(+) (comB6) [Helicobacter pylori strain Hpfe120]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSTLLEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHAFSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666238 MPG58_RS00695 WP_245012210.1 149900..150955(+) (comB6) [Helicobacter pylori strain Hpfe120]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGTTAGCACGCTTTTAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGTCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCATGCATTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGTTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.442	100	0.954