Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG08_RS07275 Genome accession   NZ_CP094058
Coordinates   1521712..1521993 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe123     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1516712..1526993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG08_RS07255 (MPG08_07255) - 1517422..1518852 (-) 1431 WP_180425991.1 COG3014 family protein -
  MPG08_RS07265 (MPG08_07265) comB4 1519084..1521447 (-) 2364 WP_245042227.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG08_RS07270 (MPG08_07270) comB3 1521449..1521712 (-) 264 WP_000584953.1 hypothetical protein Machinery gene
  MPG08_RS07275 (MPG08_07275) comB2 1521712..1521993 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG08_RS07280 (MPG08_07280) - 1522138..1522965 (-) 828 WP_048944995.1 DUF5718 family protein -
  MPG08_RS07285 (MPG08_07285) - 1523056..1524108 (-) 1053 WP_245042229.1 MnmA/TRMU family protein -
  MPG08_RS07290 (MPG08_07290) dnaG 1524105..1525784 (-) 1680 WP_245042231.1 DNA primase -
  MPG08_RS07295 (MPG08_07295) groES 1526061..1526417 (+) 357 WP_033122111.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666214 MPG08_RS07275 WP_001272686.1 1521712..1521993(-) (comB2) [Helicobacter pylori strain Hpfe123]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666214 MPG08_RS07275 WP_001272686.1 1521712..1521993(-) (comB2) [Helicobacter pylori strain Hpfe123]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAACTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989