Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG66_RS07015 Genome accession   NZ_CP094056
Coordinates   1453747..1454028 (-) Length   93 a.a.
NCBI ID   WP_000110697.1    Uniprot ID   M3NIW1
Organism   Helicobacter pylori strain Hpfe124     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1448747..1459028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG66_RS06995 (MPG66_06995) - 1449457..1450797 (-) 1341 WP_205585710.1 hypothetical protein -
  MPG66_RS07005 (MPG66_07005) comB4 1451119..1453482 (-) 2364 WP_245024736.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG66_RS07010 (MPG66_07010) comB3 1453484..1453747 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG66_RS07015 (MPG66_07015) comB2 1453747..1454028 (-) 282 WP_000110697.1 TrbC/VirB2 family protein Machinery gene
  MPG66_RS07020 (MPG66_07020) - 1454173..1455000 (-) 828 WP_180607730.1 DUF5718 family protein -
  MPG66_RS07025 (MPG66_07025) - 1455091..1456143 (-) 1053 WP_219027774.1 MnmA/TRMU family protein -
  MPG66_RS07030 (MPG66_07030) dnaG 1456140..1457819 (-) 1680 WP_245024738.1 DNA primase -
  MPG66_RS07035 (MPG66_07035) groES 1458095..1458451 (+) 357 WP_000671952.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10567.87 Da        Isoelectric Point: 9.1450

>NTDB_id=666194 MPG66_RS07015 WP_000110697.1 1453747..1454028(-) (comB2) [Helicobacter pylori strain Hpfe124]
MSVHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666194 MPG66_RS07015 WP_000110697.1 1453747..1454028(-) (comB2) [Helicobacter pylori strain Hpfe124]
ATGTCCGTTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTTAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M3NIW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978