Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB6   Type   Machinery gene
Locus tag   MPG66_RS00710 Genome accession   NZ_CP094056
Coordinates   151274..152329 (+) Length   351 a.a.
NCBI ID   WP_154466563.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe124     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 146274..157329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG66_RS00675 (MPG66_00675) - 146412..146588 (-) 177 WP_245025073.1 hypothetical protein -
  MPG66_RS00680 (MPG66_00680) - 146697..147110 (+) 414 WP_001023005.1 universal stress protein -
  MPG66_RS00685 (MPG66_00685) - 147130..147405 (+) 276 WP_000784960.1 ATP-dependent Clp protease adaptor ClpS -
  MPG66_RS00690 (MPG66_00690) - 147405..149627 (+) 2223 WP_245025075.1 ATP-dependent Clp protease ATP-binding subunit -
  MPG66_RS00695 (MPG66_00695) panD 149617..149967 (+) 351 WP_000142213.1 aspartate 1-decarboxylase -
  MPG66_RS00700 (MPG66_00700) - 149978..150271 (+) 294 WP_060870524.1 YbaB/EbfC family nucleoid-associated protein -
  MPG66_RS00705 (MPG66_00705) - 150271..151266 (+) 996 WP_245025765.1 PDZ domain-containing protein -
  MPG66_RS00710 (MPG66_00710) comB6 151274..152329 (+) 1056 WP_154466563.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG66_RS00715 (MPG66_00715) comB7 152345..152470 (+) 126 WP_120902658.1 comB7 lipoprotein Machinery gene
  MPG66_RS00720 (MPG66_00720) comB8 152467..153204 (+) 738 WP_245025077.1 virB8 family protein Machinery gene
  MPG66_RS00725 (MPG66_00725) comB9 153204..154166 (+) 963 WP_245025079.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG66_RS00730 (MPG66_00730) comB10 154159..155295 (+) 1137 WP_245025081.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG66_RS00735 (MPG66_00735) - 155361..156773 (+) 1413 WP_245025083.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 39841.80 Da        Isoelectric Point: 8.8165

>NTDB_id=666176 MPG66_RS00710 WP_154466563.1 151274..152329(+) (comB6) [Helicobacter pylori strain Hpfe124]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=666176 MPG66_RS00710 WP_154466563.1 151274..152329(+) (comB6) [Helicobacter pylori strain Hpfe124]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTTACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTCTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACGCAGAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACTTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTCTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCACATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

TrbL/VirB6 plasmid conjugal transfer protein (TrbL)

(44-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB6 Helicobacter pylori 26695

98.006

100

0.98