Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPF85_RS06970 Genome accession   NZ_CP094054
Coordinates   1457443..1457724 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe125     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1452443..1462724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF85_RS06950 (MPF85_06950) - 1453154..1454494 (-) 1341 WP_245013455.1 hypothetical protein -
  MPF85_RS06960 (MPF85_06960) comB4 1454815..1457178 (-) 2364 WP_245013456.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF85_RS06965 (MPF85_06965) comB3 1457180..1457443 (-) 264 WP_048944994.1 hypothetical protein Machinery gene
  MPF85_RS06970 (MPF85_06970) comB2 1457443..1457724 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPF85_RS06975 (MPF85_06975) - 1457869..1458696 (-) 828 WP_245013457.1 DUF5718 family protein -
  MPF85_RS06980 (MPF85_06980) - 1458787..1459839 (-) 1053 WP_245013458.1 MnmA/TRMU family protein -
  MPF85_RS06985 (MPF85_06985) dnaG 1459836..1461515 (-) 1680 WP_245013459.1 DNA primase -
  MPF85_RS06990 (MPF85_06990) groES 1461799..1462155 (+) 357 WP_245013460.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666173 MPF85_RS06970 WP_001272686.1 1457443..1457724(-) (comB2) [Helicobacter pylori strain Hpfe125]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666173 MPF85_RS06970 WP_001272686.1 1457443..1457724(-) (comB2) [Helicobacter pylori strain Hpfe125]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989