Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPF87_RS07160 Genome accession   NZ_CP094052
Coordinates   1488729..1488992 (-) Length   87 a.a.
NCBI ID   WP_000584942.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe126     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1483729..1493992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF87_RS07145 (MPF87_07145) - 1484722..1486062 (-) 1341 WP_245012587.1 hypothetical protein -
  MPF87_RS07155 (MPF87_07155) comB4 1486364..1488727 (-) 2364 WP_245012588.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF87_RS07160 (MPF87_07160) comB3 1488729..1488992 (-) 264 WP_000584942.1 hypothetical protein Machinery gene
  MPF87_RS07165 (MPF87_07165) comB2 1488992..1489273 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPF87_RS07170 (MPF87_07170) - 1489418..1490245 (-) 828 WP_245012589.1 DUF5718 family protein -
  MPF87_RS07175 (MPF87_07175) - 1490335..1491387 (-) 1053 WP_245012590.1 MnmA/TRMU family protein -
  MPF87_RS07180 (MPF87_07180) dnaG 1491384..1493063 (-) 1680 WP_245012591.1 DNA primase -
  MPF87_RS07185 (MPF87_07185) groES 1493338..1493694 (+) 357 WP_000671946.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10062.15 Da        Isoelectric Point: 9.5507

>NTDB_id=666148 MPF87_RS07160 WP_000584942.1 1488729..1488992(-) (comB3) [Helicobacter pylori strain Hpfe126]
MIILSASVKNLREISVKEKFLWLNAKSYLISIFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666148 MPF87_RS07160 WP_000584942.1 1488729..1488992(-) (comB3) [Helicobacter pylori strain Hpfe126]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTATTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGTGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966