Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG10_RS07200 Genome accession   NZ_CP094051
Coordinates   1482825..1483106 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe127     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1477825..1488106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG10_RS07180 (MPG10_07180) - 1478554..1479894 (-) 1341 WP_231225184.1 hypothetical protein -
  MPG10_RS07190 (MPG10_07190) comB4 1480196..1482559 (-) 2364 WP_245061053.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG10_RS07195 (MPG10_07195) comB3 1482562..1482825 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG10_RS07200 (MPG10_07200) comB2 1482825..1483106 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG10_RS07205 (MPG10_07205) - 1483251..1484078 (-) 828 WP_088296904.1 DUF5718 family protein -
  MPG10_RS07210 (MPG10_07210) - 1484169..1485221 (-) 1053 WP_245061055.1 MnmA/TRMU family protein -
  MPG10_RS07215 (MPG10_07215) dnaG 1485218..1486897 (-) 1680 WP_245061056.1 DNA primase -
  MPG10_RS07220 (MPG10_07220) groES 1487173..1487529 (+) 357 WP_245061057.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666128 MPG10_RS07200 WP_001272686.1 1482825..1483106(-) (comB2) [Helicobacter pylori strain Hpfe127]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666128 MPG10_RS07200 WP_001272686.1 1482825..1483106(-) (comB2) [Helicobacter pylori strain Hpfe127]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989