Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG714_RS34160 Genome accession   NZ_CP108728
Coordinates   7655658..7657391 (-) Length   577 a.a.
NCBI ID   WP_406126827.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00989     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7650658..7662391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG714_RS34150 (OG714_34135) - 7652252..7653562 (+) 1311 WP_406126824.1 RNA polymerase sigma factor -
  OG714_RS34155 (OG714_34140) rcrQ 7653730..7655658 (-) 1929 WP_406126825.1 ABC transporter ATP-binding protein Regulator
  OG714_RS34160 (OG714_34145) rcrP 7655658..7657391 (-) 1734 WP_406126827.1 ABC transporter ATP-binding protein Regulator
  OG714_RS34165 (OG714_34150) - 7657555..7659012 (-) 1458 WP_406126828.1 FGGY-family carbohydrate kinase -
  OG714_RS34170 (OG714_34155) - 7659064..7659369 (-) 306 WP_406126829.1 YtxH domain-containing protein -
  OG714_RS34190 (OG714_34175) - 7660077..7661660 (-) 1584 WP_406126830.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62657.94 Da        Isoelectric Point: 6.1924

>NTDB_id=665801 OG714_RS34160 WP_406126827.1 7655658..7657391(-) (rcrP) [Streptomyces sp. NBC_00989]
MLIRLLRTYLRPYRKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNTGAVYYGA
RTAAAVGRDIRGAIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LIAVVPTLTICVTLIVRRLRPLFRSMQVRLDAVNRVLREQITGNRVIRAFVRDEYEKDRFRKANSDLTEMQLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIASGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PLAPVTELRRHGHLEVRGVGFCYPGAEEPVLKSIDLVARPGETTAVIGSTGSGKSTLLSLVPRLVDATDGEVLVDGVDVS
TIDPVLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSRETAEATVVIVAQRVATIREADRIVVLDEGRVVGTGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=665801 OG714_RS34160 WP_406126827.1 7655658..7657391(-) (rcrP) [Streptomyces sp. NBC_00989]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAACCCATCGCCCTACTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACCCTGAACGCGCACATCATCGACAACGGTGTGGTGAAGGGGGACACCGGATACA
TCCTGTCGTTCGGCGCCCTGATGATCGGGATCTCGCTGGTCCAGGTCGTGTGCAACACGGGTGCCGTCTACTACGGCGCC
CGCACCGCGGCGGCCGTCGGCCGGGACATCCGGGGTGCCATCTTCGACCGGGTGCAGTCGTTCTCGGCCCGCGAGGTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGGACGACCAATGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGCTCGTGTCGGCGCCGATCATGTGCGTCGGCGGGATCATCCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTGATCGCGGTGGTGCCGACGCTGACCATCTGCGTGACGCTGATCGTGCGCCGGCTGCGCCCGCTGTTCCGGTCGATGCA
GGTGCGCCTCGACGCGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGGGACG
AGTACGAGAAGGACCGGTTCCGCAAGGCCAACAGCGATCTCACCGAGATGCAGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCGGTCGTGTGGTTCGGCGCGCACCGGATCGCCAGCGG
CGGGATGCAGATCGGCGATCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCGGAGGTCTGCGCCGAGCGCATCGAGGAGGTCCTCGACACCGAGAGCAGTGTCGTGCCG
CCGCTCGCGCCCGTCACCGAGCTGCGCCGGCACGGCCATCTGGAGGTCCGCGGGGTCGGCTTCTGTTACCCGGGCGCCGA
GGAACCCGTACTGAAGTCCATCGACCTGGTGGCCCGCCCGGGCGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGAA
AGTCCACCCTTCTGAGTCTCGTCCCGCGGCTGGTTGACGCGACGGACGGCGAGGTCCTCGTCGACGGAGTCGACGTGTCG
ACCATCGACCCGGTCCTGCTCGCCAAGACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTCTTCGCGGGCACGGTCGCGAC
CAACCTTCGCTACGGCAATCCCGACGCGACGGACGAGGAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAGGGGCTGGAGAACGGGCTGGACTCCCCCATCTCGCAGGGCGGCACGAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGGACACTCGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTCTCGCGGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCGACGATCA
GGGAGGCGGACCGGATCGTCGTACTCGACGAAGGACGGGTTGTGGGGACGGGGCGCCATCACGAGTTGATGGCGGGCAAT
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.898

100

0.392