Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   OG390_RS16500 Genome accession   NZ_CP108723
Coordinates   3495192..3496925 (+) Length   577 a.a.
NCBI ID   WP_406168675.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00996     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 3490192..3501925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG390_RS16490 (OG390_16495) - 3492898..3493203 (+) 306 WP_406168672.1 YtxH domain-containing protein -
  OG390_RS16495 (OG390_16500) - 3493549..3495003 (+) 1455 WP_406168673.1 FGGY family carbohydrate kinase -
  OG390_RS16500 (OG390_16505) rcrP 3495192..3496925 (+) 1734 WP_406168675.1 ABC transporter ATP-binding protein Regulator
  OG390_RS16505 (OG390_16510) rcrQ 3496925..3498904 (+) 1980 WP_406168677.1 ABC transporter ATP-binding protein Regulator
  OG390_RS16510 (OG390_16515) - 3499079..3500377 (-) 1299 WP_406168678.1 RNA polymerase sigma factor -

Sequence


Protein


Download         Length: 577 a.a.        Molecular weight: 62624.71 Da        Isoelectric Point: 5.7208

>NTDB_id=665674 OG390_RS16500 WP_406168675.1 3495192..3496925(+) (rcrP) [Streptomyces sp. NBC_00996]
MLIRLLRTYLSPYKKPISLLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGAVMIGISLAQVVCNMGAVYYGA
RTASAVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLTLMTFTLLVSAPIMCVGGIILALGLDVPLSGV
LVAVVPVLGVSVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFRGANTELTEVSLGTGRILAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTDSSVVP
PTAPVLELRRHGHLEIREAGFRYPGAEEPVLKAIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TIEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQARGFVEALENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSEETSEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=665674 OG390_RS16500 WP_406168675.1 3495192..3496925(+) (rcrP) [Streptomyces sp. NBC_00996]
GTGCTCATACGACTCCTTCGGACCTACCTCAGTCCGTACAAGAAGCCCATCTCCCTTCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACTCTCTACTTGCCCACTCTGAACGCGCACATCATTGATAACGGTGTCGTGAAGGGGGACACGGGTTACA
TCCTGTCCTTCGGCGCCGTGATGATCGGAATTTCGCTGGCACAGGTGGTCTGCAACATGGGGGCCGTCTACTACGGCGCC
CGCACGGCGTCGGCGGTGGGCCGGGACATCCGGGCCGCCGTCTTCGACCGCGTCCAGTCCTTCTCGGCGCGTGAGGTCGG
CCATTTCGGGGCGCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCACCCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCATCCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCCGTGGTGCCGGTCCTCGGCGTCTCCGTGACCCTCATCGTGCGCAGGCTGCGCCCGCTGTTCCGCACCATGCA
GGTGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGTGCCTTCGTGCGCGACG
ACTACGAGAAGGACCGCTTCCGGGGCGCGAACACCGAGCTGACCGAGGTGTCCCTCGGCACCGGGCGGATACTGGCGCTG
ATGTTCCCGATCGTCATGACCGTGGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGATCTGACGGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCGACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGGCACGGACAGCAGCGTGGTGCCT
CCCACCGCGCCCGTCCTGGAACTGCGGCGCCACGGCCACCTGGAGATCCGCGAGGCGGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTCAAGGCCATCGACCTGGTGGCGCGGCCCGGCGAGGTGACCGCCGTGATCGGGTCCACCGGCAGCGGCA
AGTCGACGCTGCTCGGGCTGGTCCCCCGGCTGTTCGACGCCACCGACGGGGAGGTGCTCGTCGACGGCGTGGACGTCGCG
ACCATCGAGCCCAAGCTGCTGGCCAGGACGGTCGGCCTCGTCCCGCAGAAGCCCTACCTCTTCGCGGGCACGGTGGCCAC
GAACCTGCGGTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAGGGGCTTCG
TGGAGGCTCTCGAGAACGGCCTCGACTCGCCGATCGCGCAGGGCGGCACAAATGTGTCGGGCGGTCAGCGCCAGCGTCTG
GCCATCGCCCGCACCCTCGTACAGCGCCCCGAGATCTACCTGTTCGACGACTCCTTCTCGGCGCTCGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTCTCCGAGGAAACCTCCGAGGCCACCGTCGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGGCGCCACCACGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.554

100

0.388