Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG623_RS24405 Genome accession   NZ_CP108688
Coordinates   5453452..5455185 (-) Length   577 a.a.
NCBI ID   WP_406149251.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01012     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5448452..5460185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG623_RS24390 (OG623_24320) - 5450127..5451218 (+) 1092 WP_406151983.1 RNA polymerase sigma factor -
  OG623_RS24395 (OG623_24325) - 5451274..5451486 (-) 213 WP_406149249.1 hypothetical protein -
  OG623_RS24400 (OG623_24330) - 5451527..5453452 (-) 1926 WP_406149250.1 ABC transporter ATP-binding protein -
  OG623_RS24405 (OG623_24335) rcrP 5453452..5455185 (-) 1734 WP_406149251.1 ABC transporter ATP-binding protein Regulator
  OG623_RS24410 (OG623_24340) - 5455443..5456888 (-) 1446 WP_406149253.1 FGGY family carbohydrate kinase -
  OG623_RS24415 (OG623_24345) - 5456984..5457286 (-) 303 WP_406151985.1 YtxH domain-containing protein -
  OG623_RS24435 (OG623_24365) - 5458422..5458889 (-) 468 WP_406149255.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG623_RS24440 (OG623_24370) - 5459325..5459743 (+) 419 Protein_4815 heme-binding protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62624.88 Da        Isoelectric Point: 6.7711

>NTDB_id=665381 OG623_RS24405 WP_406149251.1 5453452..5455185(-) (rcrP) [Streptomyces sp. NBC_01012]
MLIKLLRTHLGPYRRPIVLLVLLQLLQTCASLYLPTLNADIIDNGVVQGDTGYILEFGGVMIAVSIIQIICNIGAVYYGA
RTASALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQIQMLVLMAFTLMVSAPIMCVGGVIMALGQDIPLSAV
LLGVLPVLGIAVSLIVRRMRPLFRTMQVRLDKVNRVLREQITGNRVIRAFNRDAYEEKRFRGANTELTAVALSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFIMVPRAEVCAERIEEVLGTESSVVP
PTSPVTKLLKHGHLEIRDAEFRFPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATNGDVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALDVAQAKGFVEALEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSRETQGATVVIVAQRVSTIRDADRILVLDEGRVVGTGSHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=665381 OG623_RS24405 WP_406149251.1 5453452..5455185(-) (rcrP) [Streptomyces sp. NBC_01012]
GTGCTCATAAAACTCCTGCGGACCCATCTGGGTCCGTACAGACGTCCCATCGTGCTGCTGGTGCTGCTCCAGCTCCTGCA
GACCTGCGCAAGCCTCTATCTGCCCACCCTCAACGCGGACATCATCGACAACGGTGTCGTGCAGGGTGACACGGGCTACA
TCCTGGAATTCGGCGGCGTGATGATCGCCGTCAGCATCATCCAGATCATCTGCAACATCGGGGCGGTCTACTACGGCGCC
CGTACGGCCTCCGCTCTCGGACGGGACGTGCGGGCGTCGGTCTTCGACCGGGTGCAGTCGTTCTCCGCCCGTGAGGTGGG
GCGGTTCGGGGCTCCTTCACTGATCACGCGTACGACCAATGACGTGCAGCAGATCCAGATGCTCGTCCTGATGGCGTTCA
CCTTGATGGTGTCGGCGCCCATCATGTGTGTCGGCGGCGTCATCATGGCGCTCGGTCAGGACATCCCGCTGTCGGCGGTG
CTGCTGGGCGTGCTGCCGGTCCTGGGTATCGCGGTGAGCCTCATCGTGCGCAGGATGCGGCCGCTGTTCCGCACGATGCA
GGTGCGGCTGGACAAGGTGAACCGTGTGCTGCGCGAGCAGATCACCGGCAACCGTGTCATCCGTGCCTTCAACCGTGACG
CCTACGAGGAGAAACGCTTCCGCGGCGCCAACACGGAGCTGACGGCTGTGGCGCTGTCGACGGGGCGGCTGATGGCCCTC
ATGTTCCCGACGGTGATGACCGTGGTGAACCTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGCATCGACAGCGG
AGGGATGCAGATCGGGGCGCTGACCGCCTTCCTCGCGTATCTGATGCAGATCGTGATGTCGGTGATGATGGCCACCTTCA
TGTTCATCATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCGAGGAGGTTCTGGGGACCGAGTCGAGCGTGGTTCCG
CCCACCTCCCCGGTCACGAAGCTGCTCAAGCACGGCCATCTGGAGATACGGGACGCGGAGTTCCGCTTCCCGGGTGCGGA
AGAGCCTGTGCTGCGCTCGGTCGATCTCGTGGCGCGGCCAGGGGAAACGACCGCGATCATCGGATCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCCCGGCTGTTCGACGCGACGAACGGCGATGTGCTGGTCGACGGTACGGATGTGCGG
ACCCTGGATCCGGTGCTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTATCTCTTCTCGGGGACGGTCGCGAC
GAATCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGACGTGGCGCAGGCGAAGGGCTTCG
TGGAGGCTCTCGAACACGGTCTGCACGCGCCGATAGCGCAGGGCGGCACCAATGTCTCCGGTGGCCAGCGGCAACGCCTC
GCCATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCTGCGCTGTCCCGCGAGACGCAGGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACGATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGGACGGGCAGCCATCACGAGCTGATGGACGGCAAT
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.309

100

0.407