Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG623_RS23230 Genome accession   NZ_CP108688
Coordinates   5176982..5179213 (+) Length   743 a.a.
NCBI ID   WP_406151967.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5171982..5184213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG623_RS23210 (OG623_23140) - 5172417..5172824 (+) 408 WP_406148951.1 RidA family protein -
  OG623_RS23215 (OG623_23145) - 5173106..5174101 (+) 996 WP_406148953.1 hypothetical protein -
  OG623_RS23220 (OG623_23150) - 5174195..5175610 (-) 1416 WP_406148954.1 hydrolase -
  OG623_RS23225 (OG623_23155) - 5175731..5176732 (-) 1002 WP_406148955.1 hypothetical protein -
  OG623_RS23230 (OG623_23160) recD/recD2/recDB 5176982..5179213 (+) 2232 WP_406151967.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG623_RS23235 (OG623_23165) - 5179411..5180709 (+) 1299 WP_406148957.1 citrate synthase -
  OG623_RS23240 - 5181502..5181837 (-) 336 WP_406151968.1 heavy-metal-associated domain-containing protein -
  OG623_RS23245 (OG623_23175) - 5181836..5182888 (+) 1053 WP_406148959.1 zinc-dependent alcohol dehydrogenase family protein -
  OG623_RS23250 (OG623_23180) - 5182928..5183119 (-) 192 WP_406148961.1 helix-turn-helix transcriptional regulator -
  OG623_RS23255 (OG623_23185) - 5183256..5184182 (-) 927 WP_406148962.1 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 80311.82 Da        Isoelectric Point: 6.3946

>NTDB_id=665377 OG623_RS23230 WP_406151967.1 5176982..5179213(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01012]
MPNMAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGSLLGAQPGESLRMEGRWSSHSQYGKQFTVENYTTILPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEQRPERLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQSVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEERL
IADAVKLLQVDTGLVIDCLAELADDPEGVVRERVPGPEDGRPVTAVYLVPFHRAEISLASQTQRLLRAPEDRMPAFGDVD
WDKALSWLARRTGATLAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSVVELARAKNAKVVLAAPTGRAAKRLSELTGT
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLIKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAE
GGPVPAVRLTTIFRQAQKSGVVTNAHRINSGVPPQTQGLDDFFLFVEDETEDAGVLAVDVAARRIPAKFGLNPRRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPGLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGVVTALDADEQTLTVLT
DEDEEIGYDFDELDELAHAYAMTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLRGRTPGDFPEK

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=665377 OG623_RS23230 WP_406151967.1 5176982..5179213(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01012]
ATGCCGAACATGGCCGTTCTCGAAGGGGTCCTGGAGCGGATCACCTACGCCAACGAGGAGAACGGGTACACGGTCGCCCG
CGTCGACACCGGGCGCGGGGCCGGTGACCTGCTCACCGTCGTCGGGTCGCTGCTCGGCGCGCAGCCCGGTGAGTCGTTGC
GGATGGAGGGGCGTTGGAGCTCCCACTCGCAGTACGGCAAGCAGTTCACCGTCGAGAACTACACGACGATCCTGCCCGCG
ACCATCCAGGGGATCCGCCGCTACCTGGGTTCCGGACTGATCAAGGGCATCGGCCCTGTCATGGCGGACCGCATCACCAC
CCACTTCGGCGTCGACACCCTGGACATCATCGAGCAACGGCCCGAGCGGCTCGTCGAGGTGCCGGGGCTCGGGCCGAAGC
GGACGAAGATGATCGCCGCGGCCTGGGAGGAACAGAAGGCGATCAAGGAGGTCATGGTCTTCCTCCAGAGCGTCGGGGTC
TCCACCTCCATCGCCGTCCGTATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTCAAGAACCAGCCCTACCGGCT
GGCTGCCGACGTCTGGGGCATCGGGTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGGATCCCGCACGACAGCCCCG
AGCGGGTCAAGGCCGGGCTGCAGTACGCCCTGTCGCAGTCCACGGACCAGGGGCACTGCTTCCTGCCCGAGGAGCGGCTG
ATCGCCGACGCCGTGAAGCTGCTCCAGGTCGACACCGGGCTCGTCATCGACTGTCTGGCGGAGCTCGCCGACGACCCGGA
GGGTGTCGTGCGGGAGAGGGTGCCGGGGCCCGAGGACGGCCGGCCGGTCACCGCGGTGTATCTGGTCCCCTTCCACCGCG
CCGAGATCTCCCTCGCCTCCCAGACGCAGCGTCTGCTGCGGGCGCCGGAGGACCGGATGCCCGCCTTCGGGGACGTCGAC
TGGGACAAGGCGCTGTCCTGGCTCGCCCGGCGTACGGGGGCGACGCTGGCGCCCGAGCAGGAGGCGGCCGTCAGGCTCGC
GCTGACCGAGAAGGTCGCCGTGCTGACGGGCGGCCCCGGCTGCGGGAAGTCGTTCACCGTCCGCTCGGTCGTCGAGCTGG
CCCGGGCGAAGAACGCCAAGGTGGTCCTGGCGGCCCCCACCGGGCGGGCCGCGAAGCGGCTCTCGGAGCTGACCGGCACC
GAGGCCTCCACCGTGCACCGGCTGCTGGAGCTGAAGCCCGGCGGGGACGCGGCGTACGACCGCGACCGGCCGCTGGACGC
CGATCTGGTCGTCGTGGACGAGGCGTCGATGCTCGATCTGCTGCTCGCCAACAAGCTGATCAAGGCGGTGGCACCCGGTG
CCCACCTCCTGCTGGTGGGCGATGTGGACCAGCTGCCGTCGGTCGGTGCGGGCGAGGTGCTGCGGGATCTGCTCGCCGAG
GGCGGCCCGGTCCCCGCGGTCCGGCTGACCACCATCTTCCGGCAGGCCCAGAAGTCCGGCGTCGTCACCAACGCCCACCG
GATCAACTCCGGGGTGCCGCCGCAGACCCAGGGGCTGGACGACTTCTTCCTCTTCGTGGAGGACGAGACGGAGGACGCCG
GGGTGCTCGCCGTGGATGTCGCCGCCCGCCGCATCCCCGCCAAGTTCGGGCTGAACCCCCGCCGTGACGTGCAGGTTCTC
GCCCCGATGCACCGAGGCCCGGCAGGTGCGGGGCATCTCAACGGGCTGCTTCAGCAGGCCATCACCCCGGGCCGCCCCGG
CCTGCCGGAGAAGCGGTTCGGCGGGCGGGTCTTCCGGGTCGGCGACAAAGTGACTCAGATTCGCAACAACTATGACAAAG
GGGAGAATGGTGTCTTCAACGGTACGGTCGGTGTCGTCACCGCTCTCGACGCGGACGAGCAGACGCTGACGGTTCTCACC
GACGAGGACGAGGAGATCGGCTACGACTTCGACGAACTGGACGAGCTCGCCCACGCCTACGCGATGACCATCCACCGCTC
GCAGGGAAGTGAGTACCCGGCGGTCGTCATTCCGGTCACCACCAGCGCCTGGATGATGTTGCAGCGGAATCTGCTGTACA
CGGCCGTGACCCGGGCCAAGAAGCTGGTCGTACTGGTTGGTTCGCGCAAGGCGATCGGCCAGGCCGTCCGCACGGTTTCC
GCAGGCAGACGCTGCACGGCACTGGATTTCCGGCTCCGTGGCAGGACGCCAGGAGACTTCCCGGAAAAATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(94-143)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

AAA domain (AAA_30)

(335-514)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.256

100

0.362