Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG282_RS24120 Genome accession   NZ_CP108685
Coordinates   5501819..5503741 (-) Length   640 a.a.
NCBI ID   WP_406115313.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01014     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5496819..5508741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG282_RS24105 (OG282_24045) - 5496953..5498230 (+) 1278 WP_250298200.1 NAD(P)/FAD-dependent oxidoreductase -
  OG282_RS24110 (OG282_24050) dnaG 5498328..5500229 (+) 1902 WP_250298199.1 DNA primase -
  OG282_RS24115 (OG282_24055) - 5500421..5501644 (+) 1224 WP_250298197.1 sigma-70 family RNA polymerase sigma factor -
  OG282_RS24120 (OG282_24060) rcrQ 5501819..5503741 (-) 1923 WP_406115313.1 ABC transporter ATP-binding protein Regulator
  OG282_RS24125 (OG282_24065) rcrP 5503741..5505474 (-) 1734 WP_250298194.1 ABC transporter ATP-binding protein Regulator
  OG282_RS24130 (OG282_24070) - 5505583..5507028 (-) 1446 WP_250298193.1 FGGY family carbohydrate kinase -
  OG282_RS24135 (OG282_24075) - 5507059..5507358 (-) 300 WP_250298192.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69290.98 Da        Isoelectric Point: 5.7851

>NTDB_id=665233 OG282_RS24120 WP_406115313.1 5501819..5503741(-) (rcrQ) [Streptomyces sp. NBC_01014]
MAGPGGRMMMGPTQKSMDFKGSGKRLLRMLAQDRPALFAMLTAVVGSVALSVIGPKILGRATDLIFGGIIGRQLPASTTK
AQALQGLRAKSQGAMADMLSGVDFTPGQGIDFTEVGKILLLALAAFVCAGLLMLTTTRLAARIINQAVYRMREEIQAKLS
RLPLSYYDKAKRGEVLSRTTNDVDNIGQTMQQTMGQLVNSLLTIIGVLVMMFWISWILALVALVTVPLSVLVATRVGKRS
QPQFVQQWKVTGKLNAHIEEMYTGHALVKVFGRQEESAEAFREQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVAVI
GGLRVASGSLSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERIFELLDAEEQEPDAETAERPENLRGSISLEKV
AFRYSPDKPLIDDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIVLDGVDIARMSREDLRSGIGMVLQDTWL
FGGSIADNIAYGSSRPVTREQIEEAARAAHADRFIRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSEPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGAIVEQGSHEELLAADGAYARLYAAQFAQAVVEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=665233 OG282_RS24120 WP_406115313.1 5501819..5503741(-) (rcrQ) [Streptomyces sp. NBC_01014]
ATGGCCGGTCCTGGTGGACGCATGATGATGGGGCCGACCCAGAAGTCCATGGACTTCAAGGGGTCGGGCAAACGGCTGCT
GCGGATGCTCGCGCAGGACCGCCCCGCGCTCTTCGCGATGCTGACGGCCGTGGTCGGCAGCGTCGCTCTCTCGGTGATCG
GGCCGAAGATCCTCGGCCGGGCGACCGACCTGATCTTCGGTGGGATCATCGGCCGGCAGCTGCCGGCGAGCACGACCAAG
GCGCAGGCCCTTCAGGGGCTGCGCGCCAAGAGCCAAGGCGCCATGGCCGACATGCTCTCCGGTGTCGACTTCACTCCGGG
CCAGGGCATCGACTTCACCGAGGTCGGCAAGATCCTGCTGCTCGCGCTGGCGGCGTTCGTCTGCGCGGGCCTGCTGATGC
TGACCACCACCCGGCTCGCGGCGCGGATCATCAACCAGGCCGTGTACCGGATGCGTGAGGAGATCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTACGACAAGGCGAAGCGCGGCGAGGTGCTCAGCCGGACGACCAACGACGTCGACAACATCGG
CCAGACCATGCAGCAGACGATGGGACAGCTGGTCAACTCGCTGCTGACCATCATCGGTGTGCTGGTGATGATGTTCTGGA
TCTCCTGGATCCTCGCGCTGGTCGCGCTGGTGACCGTACCGCTGTCGGTCCTGGTGGCGACGCGGGTCGGCAAGCGGTCG
CAGCCGCAGTTCGTGCAGCAGTGGAAGGTCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACGCCCT
GGTGAAGGTCTTCGGGCGGCAGGAGGAGTCGGCGGAGGCGTTCCGCGAGCAGAACGACGCGCTGTACGAGGCGGGCTTCA
AGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTCTCCAACCTCAACTACGTGCTGGTGGCGGTCATC
GGCGGCCTCCGGGTCGCTTCGGGCTCGCTGTCGATCGGTGACGTCCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGCA
GCCGCTGACGCAGGTCGCGTCAATGGCGAACCTGGTGCAGTCGGGCGTCGCGTCCGCCGAGCGGATCTTCGAACTGCTCG
ACGCGGAGGAGCAGGAGCCCGACGCGGAGACCGCCGAGCGGCCCGAGAACCTGCGCGGCAGCATCTCGCTGGAGAAGGTC
GCCTTCCGGTACTCACCGGACAAGCCGCTCATCGACGATCTGTCGCTGTCGGTGGAGCCGGGGCACACGGTCGCGATCGT
CGGTCCGACCGGCGCGGGCAAGACGACCCTGGTGAATCTGCTGATGCGGTTCTACGAGGTGACCGGCGGGCGGATCGTGC
TCGACGGTGTCGACATCGCCAGGATGTCCCGTGAGGACCTGCGTTCCGGCATAGGGATGGTGCTCCAGGACACCTGGCTC
TTCGGCGGCTCGATCGCGGACAACATCGCGTACGGCTCCTCGCGTCCGGTCACCCGCGAGCAGATCGAGGAAGCGGCCCG
CGCGGCCCACGCCGACCGCTTCATCCGCACCCTCCCCGAGGGCTACGACACGGTGATCGACGACGAGGGCACCGGGGTGA
GCGCGGGCGAGAAGCAGCTGATCACGATCGCGCGGGCGTTCCTGTCCGAGCCGGTGATCCTGGTGCTGGACGAGGCGACG
AGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGGCTGGCGCACGGTCGTACGAGCTTCGTCAT
CGCACACCGGCTGTCCACGATCCGGGACGCGGATGTGATTCTGGTGATGGAGAGCGGGGCGATCGTCGAGCAGGGGTCGC
ACGAGGAGCTGCTGGCGGCGGACGGGGCGTACGCGCGGTTGTACGCGGCGCAGTTCGCGCAGGCAGTGGTCGAGGTCGAC
TGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.939

96.563

0.395