Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MOW04_RS08940 Genome accession   NZ_CP093546
Coordinates   1698605..1699384 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. K1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1693605..1704384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW04_RS08920 trmFO 1694298..1695605 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MOW04_RS08925 xerC 1695673..1696587 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  MOW04_RS08930 clpQ 1696600..1697145 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  MOW04_RS08935 hslU 1697153..1698565 (+) 1413 WP_257726424.1 HslU--HslV peptidase ATPase subunit -
  MOW04_RS08940 codY 1698605..1699384 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MOW04_RS08945 flgB 1699764..1700153 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  MOW04_RS08950 flgC 1700153..1700605 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  MOW04_RS08955 fliE 1700616..1700936 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  MOW04_RS08960 fliF 1700982..1702592 (+) 1611 WP_046381024.1 flagellar basal-body MS-ring/collar protein FliF -
  MOW04_RS08965 fliG 1702605..1703621 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  MOW04_RS08970 fliH 1703614..1704366 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=665140 MOW04_RS08940 WP_003220850.1 1698605..1699384(+) (codY) [Bacillus sp. K1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=665140 MOW04_RS08940 WP_003220850.1 1698605..1699384(+) (codY) [Bacillus sp. K1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTTAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467