Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG372_RS10390 Genome accession   NZ_CP108681
Coordinates   2303915..2305648 (+) Length   577 a.a.
NCBI ID   WP_266857272.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01020     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2298915..2310648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG372_RS10355 (OG372_10375) - 2300024..2300161 (+) 138 WP_266857280.1 hypothetical protein -
  OG372_RS10360 (OG372_10380) - 2300158..2300895 (+) 738 WP_406068441.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OG372_RS10380 (OG372_10400) - 2301928..2302227 (+) 300 WP_266857276.1 YtxH domain-containing protein -
  OG372_RS10385 (OG372_10405) - 2302257..2303738 (+) 1482 WP_405912213.1 FGGY family carbohydrate kinase -
  OG372_RS10390 (OG372_10410) rcrP 2303915..2305648 (+) 1734 WP_266857272.1 ABC transporter ATP-binding protein Regulator
  OG372_RS10395 (OG372_10415) rcrQ 2305648..2307645 (+) 1998 WP_328376877.1 ABC transporter ATP-binding protein Regulator
  OG372_RS10400 (OG372_10420) - 2307844..2309064 (-) 1221 WP_406068444.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62319.58 Da        Isoelectric Point: 6.7004

>NTDB_id=665038 OG372_RS10390 WP_266857272.1 2303915..2305648(+) (rcrP) [Streptomyces sp. NBC_01020]
MLISLLRTHLRPYKKPMALLALLQLLQTCATLYLPTLNADIIDNGVVKGDSGYILSYGGLMIAISVVQVICNGGAVYFGA
RTASALGRDIRAGVFDRVQSFSAREVGHFGAPSLITRTTNDVQQIQMLVLMSFTLMASAPIMCVGAIVLALGQDVPLSLV
LIAVVPVMLVLVSLIVRRMRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVKDAYEKERFKGANAELTDVSLGTARLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGAMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLSTDSSVVP
PLNPVTELARHGHLEIRGAGFKYPGAEASVLREVALEALPGETTAVIGSTGSGKSTLLGLVPRLFDATGGAVLVDGTDVR
ELDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDDELWHALDVAQAKGFVEALEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRTALRRETAESTVVIVAQRVSTIRDADRIVVMDEGQVVGTGRHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=665038 OG372_RS10390 WP_266857272.1 2303915..2305648(+) (rcrP) [Streptomyces sp. NBC_01020]
GTGCTCATATCGCTCCTGCGGACCCATTTGCGTCCGTACAAGAAACCCATGGCCCTGCTGGCGCTGCTTCAGCTGCTCCA
GACCTGCGCCACCCTCTATCTGCCGACGCTCAACGCGGACATCATCGACAACGGTGTCGTGAAGGGTGACTCGGGTTACA
TCCTGAGCTACGGCGGTCTCATGATCGCCATCAGCGTGGTTCAGGTGATCTGCAACGGGGGCGCCGTCTACTTCGGCGCC
CGGACCGCGTCCGCGCTCGGCCGGGACATCCGTGCCGGTGTCTTCGACCGGGTGCAGTCCTTCTCGGCCCGCGAGGTCGG
GCACTTCGGCGCCCCGTCCCTCATCACCCGGACGACCAATGACGTCCAGCAGATCCAGATGCTGGTCCTGATGTCGTTCA
CCCTGATGGCCTCGGCGCCGATCATGTGCGTGGGCGCCATCGTGCTGGCGCTCGGCCAGGACGTCCCGCTCTCGCTGGTC
CTGATCGCGGTCGTCCCGGTCATGCTCGTACTGGTCTCACTGATCGTCCGGCGGATGCGGCCGCTCTTCCGGAAGATGCA
GGTCCGGCTCGACACGGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGAAGGACG
CGTACGAGAAGGAGCGCTTCAAGGGCGCCAACGCCGAACTGACCGACGTCTCGCTGGGGACCGCGCGGCTGATGGCCCTG
ATGTTCCCGACGGTGATGACCGTGGTGAACGTGTCGTCGATCGCGGTGGTCTGGTTCGGCGCGCACCGGATCGACAGCGG
CGCGATGCAGATCGGGGCGCTCACCGCGTTCCTCTCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGGATCCAGGAGGTCCTCTCCACCGACTCCAGCGTGGTGCCG
CCGCTGAATCCCGTCACCGAGCTGGCCAGGCACGGCCATCTGGAGATCCGCGGGGCCGGGTTCAAGTACCCGGGCGCCGA
GGCGTCGGTGCTGCGGGAGGTCGCCCTGGAGGCGCTGCCCGGTGAGACGACCGCGGTGATCGGGTCGACCGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTACCCCGGCTGTTCGACGCCACGGGCGGCGCGGTGCTGGTGGACGGCACTGACGTACGG
GAACTCGACCCGGTCCTGCTGGCGAAGACCGTGTCCCTGGTGCCGCAGAAGCCGTATCTGTTCTCCGGGACCGTCGCGAC
GAACCTGCGGTACGGGAACCCGGACGCGACCGACGATGAGCTGTGGCACGCGCTGGATGTGGCGCAGGCCAAGGGGTTCG
TCGAGGCGCTCGAAGGCGGGCTGAACGCGCCGATCGCCCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGCCAGCGGCTG
GCGATCGCCAGGACGCTGGTCCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGACCGCGCTGCGGCGCGAGACGGCGGAGTCGACCGTGGTGATCGTCGCCCAGCGCGTCTCGACCATCC
GCGACGCGGACCGGATCGTCGTCATGGACGAGGGCCAGGTCGTCGGGACCGGCCGGCACCACGAGCTGATGGACGGCAAT
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.966

100

0.404