Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   APT55_RS09785 Genome accession   NZ_AP014642
Coordinates   2084707..2085798 (+) Length   363 a.a.
NCBI ID   WP_017289398.1    Uniprot ID   A0AA97AQ18
Organism   Leptolyngbya boryana dg5     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2079707..2090798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APT55_RS09775 (LBDG_19430) - 2081332..2083182 (+) 1851 WP_017289400.1 ArsA family ATPase -
  APT55_RS09780 (LBDG_19440) - 2083267..2084136 (+) 870 WP_086370993.1 6-carboxytetrahydropterin synthase -
  APT55_RS09785 (LBDG_19450) pilM 2084707..2085798 (+) 1092 WP_017289398.1 type IV pilus assembly protein PilM Machinery gene
  APT55_RS09790 (LBDG_19460) - 2085799..2086689 (+) 891 WP_017289397.1 PilN domain-containing protein -
  APT55_RS09795 (LBDG_19470) - 2086686..2087564 (+) 879 WP_017289396.1 hypothetical protein -
  APT55_RS09800 (LBDG_19480) - 2087616..2090147 (+) 2532 WP_017289395.1 type IV pilus secretin family protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 39526.31 Da        Isoelectric Point: 4.4899

>NTDB_id=66486 APT55_RS09785 WP_017289398.1 2084707..2085798(+) (pilM) [Leptolyngbya boryana dg5]
MVNGIKSLFSKQSKGVGIELAADRLNIAVLRKQGQGFRLGTYATVPIPEGVFHEGQITDPPAMAEIIQSALAEHKIKVKQ
VATAVSGGRDTVTRIIPVPAELDDRELREMVLNQEAGLYLPFPREEADVDYQKLGLFIDEDGIEKVQVLLVATRKEVTDS
YINTFQQAGLKIDVLEVSSFSLIRTIREQLRQFAPQEAVAIVDIEFESTEISITVDGVPQFSRTVPIGTYQIQSALSRAM
NLPPSRNIDLLQGMTIPTADSNRPGGNPGAAAMLRVLGELGDELRRSIDFYLNQGENLEIAQLMLAGPGAAIGQIDEFFT
QRLSLPCNLIDPISALSISGEDIPVNLRPGLGVVLGLGLREAW

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=66486 APT55_RS09785 WP_017289398.1 2084707..2085798(+) (pilM) [Leptolyngbya boryana dg5]
GTGGTTAACGGTATCAAGAGTTTATTCTCAAAACAGTCAAAGGGGGTTGGCATTGAGTTAGCCGCCGATCGCCTCAACAT
TGCGGTACTTCGCAAGCAGGGGCAAGGATTTCGGCTTGGCACTTATGCAACCGTTCCCATTCCTGAAGGTGTCTTTCATG
AAGGACAAATCACCGATCCGCCTGCAATGGCAGAGATCATTCAGTCTGCGTTAGCCGAACACAAAATTAAAGTGAAACAG
GTGGCAACTGCGGTATCTGGTGGACGTGATACGGTGACTCGAATTATCCCCGTTCCAGCAGAACTCGACGATCGAGAACT
GCGCGAAATGGTGCTGAATCAAGAAGCGGGTCTATATCTTCCATTCCCTCGGGAAGAAGCGGACGTAGACTATCAGAAAT
TAGGGCTATTTATCGATGAAGATGGGATCGAGAAAGTCCAAGTCTTACTGGTTGCAACTCGGAAAGAGGTAACGGATTCG
TATATCAATACGTTCCAGCAAGCAGGGCTGAAAATAGATGTCTTAGAAGTTAGCAGTTTCTCACTGATTCGTACGATTCG
CGAACAATTACGGCAGTTTGCTCCTCAAGAAGCTGTTGCGATCGTCGATATCGAATTCGAGAGCACTGAAATCTCAATCA
CAGTAGATGGTGTGCCTCAATTCTCGCGAACGGTTCCGATCGGAACTTATCAAATTCAGTCTGCACTCTCTCGTGCGATG
AATTTACCGCCTTCGCGCAACATTGACCTGCTGCAAGGTATGACGATTCCAACGGCTGATTCTAATCGTCCAGGTGGCAA
TCCGGGTGCAGCAGCCATGCTGCGAGTGTTGGGCGAGCTAGGAGATGAACTGCGGCGATCGATTGATTTTTACCTGAATC
AAGGCGAGAACTTAGAAATTGCTCAATTGATGTTAGCAGGACCTGGAGCCGCAATCGGACAGATTGACGAGTTCTTTACC
CAGCGATTGAGCTTGCCTTGTAACTTAATCGATCCGATCTCAGCCCTATCGATCAGTGGCGAGGATATTCCAGTCAATCT
CCGTCCAGGTCTGGGTGTCGTGCTGGGTTTAGGACTGCGGGAGGCGTGGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

63.587

100

0.645

Multiple sequence alignment