Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | MON12_RS12085 | Genome accession | NZ_CP093424 |
| Coordinates | 2314229..2315008 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus pacificus strain MP6 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2275340..2330448 | 2314229..2315008 | within | 0 |
Gene organization within MGE regions
Location: 2275340..2330448
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MON12_RS11895 (MON12_11895) | rsmB | 2275562..2276896 (+) | 1335 | WP_001249677.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| MON12_RS11900 (MON12_11900) | rlmN | 2276901..2277989 (+) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| MON12_RS11905 (MON12_11905) | - | 2277994..2278746 (+) | 753 | WP_000648696.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| MON12_RS11910 (MON12_11910) | prkC | 2278755..2280728 (+) | 1974 | WP_088106438.1 | serine/threonine protein kinase PrkC | - |
| MON12_RS11915 (MON12_11915) | rsgA | 2280997..2281878 (+) | 882 | WP_088106439.1 | ribosome small subunit-dependent GTPase A | - |
| MON12_RS11920 (MON12_11920) | rpe | 2281881..2282525 (+) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| MON12_RS11925 (MON12_11925) | - | 2282625..2283305 (+) | 681 | WP_041184501.1 | thiamine diphosphokinase | - |
| MON12_RS11930 (MON12_11930) | spoVM | 2283372..2283452 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| MON12_RS11935 (MON12_11935) | rpmB | 2283526..2283714 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| MON12_RS11940 (MON12_11940) | - | 2284093..2284455 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| MON12_RS11945 (MON12_11945) | - | 2284478..2286154 (+) | 1677 | WP_000027112.1 | DAK2 domain-containing protein | - |
| MON12_RS11950 (MON12_11950) | recG | 2286443..2288491 (+) | 2049 | WP_001006880.1 | ATP-dependent DNA helicase RecG | - |
| MON12_RS11955 (MON12_11955) | fapR | 2288580..2289173 (+) | 594 | WP_000747352.1 | transcription factor FapR | - |
| MON12_RS11960 (MON12_11960) | plsX | 2289170..2290162 (+) | 993 | WP_000684108.1 | phosphate acyltransferase PlsX | - |
| MON12_RS11965 (MON12_11965) | fabD | 2290177..2291121 (+) | 945 | WP_000516951.1 | ACP S-malonyltransferase | - |
| MON12_RS11970 (MON12_11970) | fabG | 2291121..2291861 (+) | 741 | WP_000911784.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| MON12_RS11975 (MON12_11975) | acpP | 2291931..2292164 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| MON12_RS11980 (MON12_11980) | rncS | 2292223..2292960 (+) | 738 | WP_001146876.1 | ribonuclease III | - |
| MON12_RS11985 (MON12_11985) | smc | 2293108..2296677 (+) | 3570 | WP_088106440.1 | chromosome segregation protein SMC | - |
| MON12_RS11990 (MON12_11990) | ftsY | 2296693..2297682 (+) | 990 | WP_000007647.1 | signal recognition particle-docking protein FtsY | - |
| MON12_RS11995 (MON12_11995) | - | 2297816..2298148 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| MON12_RS12000 (MON12_12000) | ffh | 2298161..2299510 (+) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
| MON12_RS12005 (MON12_12005) | rpsP | 2299611..2299883 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| MON12_RS12010 (MON12_12010) | - | 2299898..2300125 (+) | 228 | WP_000737403.1 | KH domain-containing protein | - |
| MON12_RS12015 (MON12_12015) | rimM | 2300247..2300762 (+) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| MON12_RS12020 (MON12_12020) | trmD | 2300762..2301496 (+) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| MON12_RS12025 (MON12_12025) | rplS | 2301643..2301987 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| MON12_RS12030 (MON12_12030) | lepB | 2302089..2302640 (+) | 552 | WP_000711857.1 | signal peptidase I | - |
| MON12_RS12035 (MON12_12035) | ylqF | 2302661..2303551 (+) | 891 | WP_000236697.1 | ribosome biogenesis GTPase YlqF | - |
| MON12_RS12040 (MON12_12040) | rnhB | 2303603..2304376 (+) | 774 | WP_001174724.1 | ribonuclease HII | - |
| MON12_RS12045 (MON12_12045) | sucC | 2304570..2305730 (+) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| MON12_RS12050 (MON12_12050) | sucD | 2305750..2306652 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| MON12_RS12055 (MON12_12055) | dprA | 2306740..2307609 (+) | 870 | WP_000818028.1 | DNA-processing protein DprA | - |
| MON12_RS12060 (MON12_12060) | topA | 2307754..2309832 (+) | 2079 | WP_001286972.1 | type I DNA topoisomerase | - |
| MON12_RS12065 (MON12_12065) | trmFO | 2309883..2311187 (+) | 1305 | WP_002028254.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| MON12_RS12070 (MON12_12070) | xerC | 2311253..2312152 (+) | 900 | WP_001101228.1 | tyrosine recombinase XerC | - |
| MON12_RS12075 (MON12_12075) | hslV | 2312195..2312737 (+) | 543 | WP_000526271.1 | ATP-dependent protease proteolytic subunit HslV | - |
| MON12_RS12080 (MON12_12080) | hslU | 2312760..2314151 (+) | 1392 | WP_000550081.1 | ATP-dependent protease ATPase subunit HslU | - |
| MON12_RS12085 (MON12_12085) | codY | 2314229..2315008 (+) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| MON12_RS12090 (MON12_12090) | rpsB | 2315357..2316058 (+) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| MON12_RS12095 (MON12_12095) | tsf | 2316162..2317049 (+) | 888 | WP_001018580.1 | translation elongation factor Ts | - |
| MON12_RS12100 (MON12_12100) | pyrH | 2317116..2317838 (+) | 723 | WP_000042663.1 | UMP kinase | - |
| MON12_RS12105 (MON12_12105) | frr | 2317841..2318398 (+) | 558 | WP_000531500.1 | ribosome recycling factor | - |
| MON12_RS12110 (MON12_12110) | uppS | 2318484..2319260 (+) | 777 | WP_000971300.1 | isoprenyl transferase | - |
| MON12_RS12115 (MON12_12115) | cdsA | 2319278..2320069 (+) | 792 | WP_000813586.1 | phosphatidate cytidylyltransferase | - |
| MON12_RS12120 (MON12_12120) | dxr | 2320093..2321235 (+) | 1143 | WP_000790363.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| MON12_RS12125 (MON12_12125) | rseP | 2321252..2322508 (+) | 1257 | WP_001090246.1 | RIP metalloprotease RseP | - |
| MON12_RS12130 (MON12_12130) | - | 2322618..2324318 (+) | 1701 | WP_000814305.1 | proline--tRNA ligase | - |
| MON12_RS12135 (MON12_12135) | - | 2324443..2328744 (+) | 4302 | WP_049113048.1 | PolC-type DNA polymerase III | - |
| MON12_RS12140 (MON12_12140) | rimP | 2329077..2329547 (+) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=664625 MON12_RS12085 WP_000421288.1 2314229..2315008(+) (codY) [Bacillus pacificus strain MP6]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=664625 MON12_RS12085 WP_000421288.1 2314229..2315008(+) (codY) [Bacillus pacificus strain MP6]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCGCGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCACGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCGCGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCACGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |