Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG596_RS24600 Genome accession   NZ_CP108654
Coordinates   5489884..5492115 (+) Length   743 a.a.
NCBI ID   WP_405393219.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5484884..5497115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG596_RS24570 (OG596_24515) - 5485506..5486648 (+) 1143 WP_405390756.1 dihydrodipicolinate synthase family protein -
  OG596_RS24575 (OG596_24520) - 5486645..5487478 (+) 834 WP_405390757.1 sugar phosphate isomerase/epimerase family protein -
  OG596_RS24580 (OG596_24525) - 5487753..5488259 (-) 507 WP_405390758.1 DUF6584 family protein -
  OG596_RS24585 (OG596_24530) - 5488441..5488824 (-) 384 WP_405390759.1 winged helix-turn-helix transcriptional regulator -
  OG596_RS24590 (OG596_24535) - 5488949..5489356 (+) 408 WP_405390760.1 RidA family protein -
  OG596_RS24595 (OG596_24540) - 5489518..5489751 (-) 234 Protein_4845 class I SAM-dependent methyltransferase -
  OG596_RS24600 (OG596_24545) recD/recD2/recDB 5489884..5492115 (+) 2232 WP_405393219.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG596_RS24605 (OG596_24550) - 5492314..5493612 (+) 1299 WP_405390761.1 citrate synthase -
  OG596_RS24610 (OG596_24555) - 5494181..5496598 (-) 2418 WP_405390762.1 heavy metal translocating P-type ATPase -
  OG596_RS24615 (OG596_24560) - 5496735..5497040 (-) 306 WP_405390763.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 80371.16 Da        Isoelectric Point: 6.4535

>NTDB_id=664529 OG596_RS24600 WP_405393219.1 5489884..5492115(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01102]
MPNMAVLEGVLERITYANEENGYTVARVDTGRGMNDLLTVVGSLLGAQPGESLRMEGRWGSHPQFGKQFTVENYTTILPA
TIQGIRRYLGSGLIKGIGPVMADRITTYFGVDTLDIIEQQPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQTVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEERL
IADAVKLLQVDTGLVIDCLAELAEDPEGVVREKVPGPEDGQPVTAVYLVPFHRAEISLAAQVQRLLRTPEDRMPAFQDVA
WDKALAWLARRTGATLAPEQEAAVRLALSRKVAVLTGGPGCGKSFTVRSVVELARAKNAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRERPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAD
GGPVPAVRLTTIFRQAQQSGVVTNAHRINSGVPPLTQGLSDFFLFVEDETEDAGVLAVDVAARRIPAKFGLNPRRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPDLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGVVTALDTDEQKLTVLT
DEDEEIVYDFDELDELAHAYAMTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLRGGPGEDFAEK

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=664529 OG596_RS24600 WP_405393219.1 5489884..5492115(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01102]
GTGCCCAACATGGCCGTACTCGAAGGCGTCCTGGAGCGGATCACCTACGCCAACGAGGAGAACGGCTACACCGTGGCCCG
CGTCGACACCGGGCGCGGGATGAACGACCTGCTCACCGTCGTCGGTTCGCTGCTCGGTGCGCAGCCGGGCGAGTCCCTGC
GGATGGAGGGGCGTTGGGGCTCCCATCCACAGTTCGGGAAGCAGTTCACCGTCGAGAACTACACGACGATCCTCCCCGCC
ACGATCCAGGGCATCCGCCGCTACCTCGGATCGGGCCTGATCAAGGGCATCGGTCCCGTCATGGCCGACCGCATCACCAC
GTACTTCGGCGTCGACACCCTGGACATCATCGAGCAGCAGCCCAAGAGGCTCGTCGAGGTGCCCGGCCTGGGCCCGAAGC
GGACGAAGATGATCGCCGCGGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATGGTTTTCCTCCAGACCGTGGGCGTC
TCCACGTCCATCGCCGTCCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGCATTCCGCACGACAGCCCGG
AGCGGGTCAAGGCCGGGCTGCAGTACGCGCTGTCCCAGTCCACCGACCAGGGGCACTGCTTCCTGCCCGAGGAGCGGCTG
ATCGCGGACGCGGTGAAGCTCCTCCAGGTGGACACCGGCCTCGTCATCGACTGCCTGGCCGAACTCGCCGAGGACCCCGA
GGGCGTCGTACGGGAGAAGGTGCCGGGGCCCGAGGACGGGCAGCCCGTCACCGCCGTGTACCTGGTGCCGTTCCATCGCG
CCGAGATCTCCCTCGCCGCCCAGGTGCAGCGCCTGCTGCGTACGCCGGAGGACCGCATGCCGGCCTTCCAGGACGTCGCA
TGGGACAAGGCGCTGGCCTGGCTCGCGCGGCGTACGGGAGCCACCCTCGCCCCCGAGCAGGAGGCGGCCGTCCGGCTCGC
GCTCAGCCGGAAGGTCGCCGTCCTCACGGGCGGTCCCGGCTGCGGCAAGTCGTTCACGGTCCGGTCCGTCGTCGAGCTGG
CCCGTGCCAAGAACGCGAAGGTGGTGCTGGCCGCACCCACCGGGCGGGCGGCGAAGCGGCTCTCGGAGCTGACCGGCGCC
GAGGCGTCCACCGTGCACCGGCTGCTGGAGCTGAAGCCGGGCGGGGACGCGGCCTACGACCGGGAACGGCCGCTGGACGC
CGACCTGGTCGTCGTCGACGAGGCGTCGATGCTCGACCTGCTGCTCGCCAACAAACTCGTCAAGGCGGTGGCACCCGGTG
CCCACCTCCTGCTCGTGGGCGACGTCGACCAGCTTCCCTCGGTCGGCGCGGGGGAGGTGCTGCGGGACCTGCTCGCCGAC
GGCGGCCCGGTGCCGGCGGTCCGGCTGACCACGATCTTCCGCCAGGCCCAGCAGTCCGGAGTCGTCACCAACGCCCACCG
GATCAACTCGGGGGTCCCGCCGCTCACCCAGGGGCTGAGCGACTTCTTCCTCTTCGTGGAGGACGAGACGGAGGACGCCG
GGGTGCTCGCCGTGGACGTCGCGGCCCGTCGCATCCCCGCCAAATTCGGCCTGAACCCCCGCCGTGACGTGCAGGTTCTC
GCCCCCATGCACCGCGGTCCGGCAGGCGCCGGTCATCTCAACGGCCTCCTCCAGCAGGCCATCACCCCCGGCCGCCCCGA
CCTGCCCGAGAAGCGTTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGACAAGG
GGGAGAACGGCGTCTTCAACGGCACGGTCGGAGTCGTCACCGCCCTCGACACGGACGAGCAGAAGCTCACCGTCCTCACG
GACGAGGACGAGGAGATCGTGTACGACTTCGACGAGCTCGACGAGCTCGCCCACGCCTACGCGATGACGATCCACCGCTC
CCAGGGCAGCGAATACCCGGCCGTCGTCATCCCCGTCACCACGAGCGCGTGGATGATGCTGCAGCGGAACCTGCTGTACA
CGGCTGTGACCAGGGCCAAGAAGCTTGTTGTACTGGTGGGTTCACGCAAGGCCATCGGTCAGGCGGTACGCACGGTTTCC
GCAGGCAGACGCTGTACGGCACTGGATTTCCGGCTTCGTGGCGGGCCGGGCGAAGACTTCGCGGAAAAATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(335-514)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

Helix-hairpin-helix domain (HHH_5)

(94-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.526

100

0.363