Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG450_RS12880 Genome accession   NZ_CP108652
Coordinates   3005712..3007445 (+) Length   577 a.a.
NCBI ID   WP_266778507.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01104     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3000712..3012445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG450_RS12845 (OG450_12820) - 3000865..3001662 (+) 798 WP_405403174.1 VOC family protein -
  OG450_RS12850 (OG450_12825) - 3001688..3002959 (-) 1272 WP_266778471.1 MFS transporter -
  OG450_RS12870 (OG450_12845) - 3003746..3004045 (+) 300 WP_266786133.1 YtxH domain-containing protein -
  OG450_RS12875 (OG450_12850) - 3004114..3005559 (+) 1446 WP_266778505.1 FGGY family carbohydrate kinase -
  OG450_RS12880 (OG450_12855) rcrP 3005712..3007445 (+) 1734 WP_266778507.1 ABC transporter ATP-binding protein Regulator
  OG450_RS12885 (OG450_12860) - 3007445..3009376 (+) 1932 WP_285570106.1 ABC transporter ATP-binding protein -
  OG450_RS12890 (OG450_12865) - 3009419..3010543 (-) 1125 WP_323177990.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62647.61 Da        Isoelectric Point: 5.2467

>NTDB_id=664419 OG450_RS12880 WP_266778507.1 3005712..3007445(+) (rcrP) [Streptomyces sp. NBC_01104]
MLIKLLRAYLGPYKKPIALLVVFQLLQTCATLYLPTLNADIIDNGVVQGDTSYILQYGGVMIVVSIAQVVCNIGAVYIGA
RTASALGRDVRASVFDRVQSFSSREVGRFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIESGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVKPVRELTAHGHLEVRGADFRYPGAEEPVLRSVDLVARAGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALDIAQAKEFVEGLEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRAALLRETSGATVVIVAQRVSTIRDADRILVLDEGRVVGSGSHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=664419 OG450_RS12880 WP_266778507.1 3005712..3007445(+) (rcrP) [Streptomyces sp. NBC_01104]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGCCCGTACAAGAAGCCGATCGCGCTGCTGGTCGTCTTCCAGCTGCTGCA
GACCTGCGCCACGCTCTATCTGCCCACCCTGAACGCCGACATCATTGACAACGGTGTCGTCCAGGGGGACACCAGCTACA
TCCTCCAGTACGGCGGCGTGATGATCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGCGCC
CGCACCGCGTCCGCGCTCGGCCGTGACGTCCGCGCGTCGGTCTTCGACCGGGTGCAGTCGTTCTCCTCGCGCGAGGTCGG
CCGGTTCGGCGCTCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CCCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTCTCCGCGGTG
CTGCTCGCGGTGGTGCCGGTCCTCGGCATCGCGGTGAGTCTCATCGTGCGCAGGATGCGCCCGCTGTTCCGGACCATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
GCTACGAGGAGGAGCGCTTCCGGGGCGCCAACACCGAACTGACGGACGTGGCGCTGTCCACGGGCCGGCTGATGGCACTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGCGCGCACCGCATCGAGAGCGG
CGGGATGGAGATCGGCGCGCTGACGGCGTTCCTCTCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCGGAGCGCATCCAGGAGGTCCTGGAGACCGACTCCAGCGTGGTGCCG
CCGGTGAAGCCGGTGCGGGAGCTGACCGCCCACGGCCATCTGGAGGTGCGCGGCGCGGACTTCCGCTACCCCGGCGCCGA
GGAGCCGGTGCTGCGCTCGGTGGACCTGGTGGCCCGGGCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGACTCGTACCCCGGCTGTTCGATGTGACGGACGGCCAGGTGCTGGTCGACGGGACGGACGTACGC
ACGCTGGATCCGGTGCTGCTGGCGAAGACCGTGAGTCTGGTCCCGCAGAAGCCGTACCTCTTCTCCGGGACGGTCGCGAC
GAACCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGACATCGCGCAGGCCAAGGAGTTCG
TCGAGGGTCTGGAGCACGGGCTCGACGCACCCATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGGCTC
TCGATCGCCCGGACGCTGGTGCAGCGCCCGGAGATCTATCTGTTCGACGACTCCTTCTCGGCGCTGGACTACGCCACGGA
CGCGGCGCTGCGCGCGGCGCTGCTGCGGGAGACGTCCGGCGCGACGGTGGTGATCGTCGCCCAGCGGGTGTCCACCATCC
GCGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGCGTCGTCGGCTCCGGCAGCCACCACGAGCTGATGGACGGCAAT
GAAACATACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.587

100

0.399