Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG508_RS27560 Genome accession   NZ_CP108649
Coordinates   6021782..6023713 (-) Length   643 a.a.
NCBI ID   WP_266746082.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01108     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6016782..6028713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG508_RS27545 (OG508_27585) - 6016991..6018250 (+) 1260 WP_266746085.1 NAD(P)/FAD-dependent oxidoreductase -
  OG508_RS27550 (OG508_27590) dnaG 6018364..6020271 (+) 1908 WP_327259321.1 DNA primase -
  OG508_RS27555 (OG508_27595) - 6020620..6021714 (+) 1095 WP_266746083.1 RNA polymerase sigma factor -
  OG508_RS27560 (OG508_27600) rcrQ 6021782..6023713 (-) 1932 WP_266746082.1 ABC transporter ATP-binding protein Regulator
  OG508_RS27565 (OG508_27605) rcrP 6023713..6025446 (-) 1734 WP_266746081.1 ABC transporter ATP-binding protein Regulator
  OG508_RS27570 (OG508_27610) - 6025616..6027061 (-) 1446 WP_266746080.1 FGGY family carbohydrate kinase -
  OG508_RS27575 (OG508_27615) - 6027134..6027442 (-) 309 WP_266746079.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69268.71 Da        Isoelectric Point: 5.2124

>NTDB_id=664384 OG508_RS27560 WP_266746082.1 6021782..6023713(-) (rcrQ) [Streptomyces sp. NBC_01108]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFAPEKAPLYVMLAACVASVGLSVVGPKILGKATDLVFAGVIGRQMPDGT
TKEQAVEGLRRANSGLADMLSGVDFVPGHGIDFGAVADVLLVALAVYVGAGLLMLVATRLSIRIINRVVFQLREDIQTKL
SRLPLSYFDQAKRGEVLSRATNDIDNISQTMQQTMGQLISSLLTIVGVLIMMFWVSPLLALVALVTVPLSVVVAAKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQSADPAPGTGERPKELRGNVSL
EKVSFRYDPEKPLIEDLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDVAKMSRDELRSGIGMVLQD
TWLFGGSIAENIAYGASREVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADIILVMENGSIVEQGTHDELLAAEGAYARLYSAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=664384 OG508_RS27560 WP_266746082.1 6021782..6023713(-) (rcrQ) [Streptomyces sp. NBC_01108]
ATGGCCGGTCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGGACTTCAAGGGGTCCTCGAAGCG
GCTCCTGAAGCGCTTCGCCCCGGAGAAGGCGCCGCTGTACGTGATGCTGGCGGCCTGCGTGGCGAGCGTCGGGCTGTCGG
TGGTCGGGCCGAAGATCCTCGGCAAGGCGACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCAGATGCCCGACGGCACG
ACGAAGGAACAGGCCGTGGAGGGCCTGCGCAGGGCCAACAGCGGCCTCGCCGACATGCTGTCCGGGGTGGACTTCGTCCC
CGGGCACGGCATCGACTTCGGTGCGGTGGCCGACGTACTGCTGGTGGCGCTGGCGGTCTATGTCGGTGCGGGGCTGCTCA
TGCTGGTGGCCACCCGACTGTCGATCCGGATCATCAACCGGGTCGTGTTCCAGCTGCGTGAGGACATTCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCAGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCCCAGACGATGCAGCAGACGATGGGTCAGCTCATCAGCTCCCTGCTCACCATCGTCGGCGTGCTGATCATGATGTTCT
GGGTCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTCGTCGTGGCCGCGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGCAAACTCAACGCCCACATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCAGGCT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTCTCGAACCTGAACTATGTGCTGATCGCCGTC
GTGGGTGGCCTGCGGGTCGCTTCGGGTTCGCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCGTCGGCCGAGCGCATCTTCGAGCTGC
TGGACGCCGAGGAGCAGAGCGCCGACCCCGCGCCCGGCACGGGCGAACGCCCGAAGGAGCTGCGAGGCAACGTCTCGCTG
GAGAAGGTGTCGTTCCGTTACGACCCGGAGAAGCCGCTCATCGAGGACCTCTCGCTGAACGTCGAGCCGGGCCACACGGT
CGCGATCGTCGGCCCGACCGGCGCGGGCAAGACCACGCTCGTCAATCTCCTGATGCGGTTCTACGAGGTGACGGGCGGGC
GGATCACCCTCGACGGGGTCGACGTGGCGAAGATGTCGCGCGACGAGCTGCGGTCGGGAATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGTCGATAGCGGAGAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAAGAGATCGAGGA
GGCCGCGAGGGCCGCCCACGCCGACCGCTTCGTCCGCACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCT
CCGGCGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGAC
GAAGCGACGAGTTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTGGCGCACGGTCGTACGAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGATGCCGACATCATCCTGGTGATGGAGAACGGCTCGATCGTCGAAC
AGGGCACGCACGACGAACTGCTGGCTGCCGAGGGGGCGTACGCCCGGCTGTATTCGGCGCAGTTCGCGCAGGCGGTCGCC
GAAGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(58-350)

ABC transporter (ABC_tran)

(415-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.005

96.89

0.378