Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG762_RS13655 Genome accession   NZ_CP108632
Coordinates   3019761..3021740 (+) Length   659 a.a.
NCBI ID   WP_405879602.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01136     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3014761..3026740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG762_RS13640 (OG762_13700) - 3015866..3016171 (+) 306 WP_405879600.1 YtxH domain-containing protein -
  OG762_RS13645 (OG762_13705) - 3016369..3017823 (+) 1455 WP_405879601.1 FGGY family carbohydrate kinase -
  OG762_RS13650 (OG762_13710) rcrP 3018028..3019761 (+) 1734 WP_405885531.1 ABC transporter ATP-binding protein Regulator
  OG762_RS13655 (OG762_13715) rcrQ 3019761..3021740 (+) 1980 WP_405879602.1 ABC transporter ATP-binding protein Regulator
  OG762_RS13660 (OG762_13720) - 3021815..3023218 (-) 1404 WP_405879603.1 RNA polymerase sigma factor -
  OG762_RS13665 (OG762_13725) dnaG 3023488..3025392 (-) 1905 WP_405887716.1 DNA primase -
  OG762_RS13670 (OG762_13730) - 3025439..3026704 (-) 1266 WP_405887718.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 70891.69 Da        Isoelectric Point: 7.1371

>NTDB_id=664092 OG762_RS13655 WP_405879602.1 3019761..3021740(+) (rcrQ) [Streptomyces sp. NBC_01136]
MAGPMGRMMAGGGPDQHSMDFKGSGKRLLAQFKPERTTMYGMLVAVVLSVTLSVIGPKILGKATDLVFAGIIGRQMPAGA
TKAEVLAGMRRRGEGGMADMLSGTDFTPGKGIDFGAVGNVLLLALCTFLLSGLLMAVATRLVNRAVNKTVYRMRENLQAK
LSRLPLSYFDKRQRGEVLSRATNDLDNIQQTLQQSMGQLVNSLLTIVGVLAMMFWVSWLLALVALVTVPLSFFVATRIGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQEESAAQFAEQNEKLYEAGFRAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERVFELLDAEEQAADPVPAARPDELRGRVALE
NVSFRYDPEKPLIEDLSLKVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDISSMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGAGVEGAARSASGKGGGGRRVGVTRGEIEEAARAAHADRFIRTLPEGYDTVIDDEGTGVSAGEKQLI
TIARAFLSDPVILVLDEATSSVDTRTEVLIQKAMAKLADGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHAELLAAN
GAYARLYKAQFAQAVAEVD

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=664092 OG762_RS13655 WP_405879602.1 3019761..3021740(+) (rcrQ) [Streptomyces sp. NBC_01136]
ATGGCCGGTCCCATGGGACGCATGATGGCCGGGGGTGGCCCCGATCAGCACTCGATGGATTTCAAGGGGTCCGGAAAACG
GCTCCTGGCACAGTTCAAACCCGAACGCACCACAATGTACGGGATGCTCGTCGCCGTCGTCCTGAGCGTGACGCTCTCGG
TGATCGGACCGAAGATCCTCGGCAAGGCCACCGACCTCGTCTTCGCGGGGATCATCGGACGGCAGATGCCGGCCGGCGCC
ACCAAGGCCGAGGTCCTCGCCGGCATGCGCAGGCGCGGCGAGGGGGGCATGGCCGACATGCTCTCGGGGACCGACTTCAC
CCCCGGCAAGGGCATCGACTTCGGAGCCGTCGGGAACGTACTCCTGCTCGCGCTCTGTACGTTCCTGCTGTCCGGCCTGC
TGATGGCGGTGGCGACGCGCCTGGTGAACCGGGCCGTCAACAAGACCGTCTACCGCATGCGCGAGAACCTGCAGGCGAAG
CTCTCGCGCCTGCCCCTCTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTGCTCAGCCGCGCCACGAACGACCTCGACAA
CATCCAGCAGACCCTGCAGCAGTCGATGGGCCAGCTGGTGAACTCCCTGCTGACCATCGTCGGCGTGCTCGCGATGATGT
TCTGGGTGTCGTGGCTGCTCGCGCTGGTGGCGCTGGTCACGGTCCCGCTCTCCTTCTTCGTCGCCACCCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCA
CACGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGAGAAGTTGTACGAGGCCG
GGTTCAGGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTGGCG
GTGGTCGGCGGACTGCGTGTCGCGTCCGGCTCGCTGTCGATCGGCGACGTGCAGGCCTTCATCCAGTACTCCCGCCAGTT
CTCGATGCCGCTGACGCAGGTGGCGTCGATGGCGAACCTGGTGCAGTCGGGTATCGCGTCGGCGGAGCGCGTCTTCGAAC
TCCTCGACGCGGAGGAGCAGGCGGCCGACCCGGTGCCGGCGGCACGCCCCGACGAGCTGCGCGGACGGGTGGCGCTGGAG
AACGTGTCCTTCCGCTACGACCCCGAGAAGCCGCTCATCGAGGACCTGTCGCTCAAGGTGGAGCCGGGCCAAACGGTGGC
GATCGTCGGCCCGACCGGCGCCGGCAAGACGACCCTGGTGAACCTCCTGATGCGCTTCTACGAGGTCACCGGCGGCCGGA
TCACCCTGGACGGCGTCGACATCTCCTCGATGTCCCGGGACGAACTCCGGGCCGGGATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGGGCTGGAGTAGAAGGGGCGGCGCGAAGTGCCTCCGGCAA
GGGTGGTGGTGGGCGACGGGTGGGCGTGACGCGCGGGGAGATCGAGGAGGCGGCGCGGGCCGCTCACGCGGACCGTTTCA
TCCGTACGCTCCCGGAGGGCTACGACACCGTCATCGACGACGAGGGGACGGGGGTCAGCGCGGGTGAGAAGCAGCTGATC
ACCATCGCGCGGGCGTTCCTTTCCGATCCGGTGATCCTGGTGCTGGACGAGGCGACCAGCTCGGTGGACACCCGTACGGA
GGTGCTGATCCAGAAAGCGATGGCGAAACTGGCGGACGGCCGGACGTCGTTCGTCATCGCCCACCGCCTGTCGACGATCC
GCGACGCCGACACCATCCTCGTGATGGAGAACGGCTCGATCGTGGAGCAGGGCGCCCATGCGGAGCTGCTCGCGGCGAAC
GGGGCGTACGCCCGCCTGTACAAGGCCCAGTTCGCCCAGGCGGTGGCCGAGGTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(44-351)

ABC transporter (ABC_tran)

(414-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.843

96.358

0.384