Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG379_RS12755 Genome accession   NZ_CP108613
Coordinates   2737616..2739349 (+) Length   577 a.a.
NCBI ID   WP_405662206.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01166     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2732616..2744349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG379_RS12720 (OG379_12745) - 2733569..2733802 (-) 234 WP_405662200.1 hypothetical protein -
  OG379_RS12725 (OG379_12750) - 2733959..2734882 (+) 924 WP_405662202.1 MBL fold metallo-hydrolase -
  OG379_RS12745 (OG379_12770) - 2735666..2735977 (+) 312 WP_405662204.1 YtxH domain-containing protein -
  OG379_RS12750 (OG379_12775) - 2736059..2737504 (+) 1446 WP_393761792.1 FGGY family carbohydrate kinase -
  OG379_RS12755 (OG379_12780) rcrP 2737616..2739349 (+) 1734 WP_405662206.1 ABC transporter ATP-binding protein Regulator
  OG379_RS12760 (OG379_12785) - 2739349..2741271 (+) 1923 WP_405662208.1 ABC transporter ATP-binding protein -
  OG379_RS12765 (OG379_12790) - 2741318..2742400 (-) 1083 WP_405668490.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62676.77 Da        Isoelectric Point: 5.7469

>NTDB_id=664013 OG379_RS12755 WP_405662206.1 2737616..2739349(+) (rcrP) [Streptomyces sp. NBC_01166]
MLIKLLRTYLGPYRRPIVLLVLLQLLQTCASLYLPSLNADIIDNGVVQGDTGYILEFGGVMIAVSVVQIVCNIGAVYYGA
RTASALGRDVRASIFGRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGVIMALGQDVPLSAV
LLAVLPVLGISVSLIVRRMRPLFRTMQVRLDTVNRVLREQITGNRVIRAFIRDGYEEERFRRANTELTDVAVSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFIMVPRAEVCAERIQEVLETESSVVP
PTAPVTKLLKHGHLEIRGAEFRFPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGDVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKDFVERLEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQQPEIYLFDDSFSALDYATDAALRAALSRETAGATVVTVAQRVSTIRDADRILVLDEGRVVGTGSHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=664013 OG379_RS12755 WP_405662206.1 2737616..2739349(+) (rcrP) [Streptomyces sp. NBC_01166]
GTGCTCATAAAACTCCTGCGGACCTATCTGGGTCCGTACAGACGTCCCATCGTGCTGCTGGTGCTCCTCCAGCTGCTGCA
GACCTGCGCAAGCCTCTATCTGCCCAGCCTCAACGCGGACATCATCGACAACGGTGTCGTGCAGGGCGACACGGGTTACA
TCCTGGAATTCGGCGGCGTGATGATCGCCGTCAGCGTCGTCCAGATCGTCTGCAACATCGGGGCGGTCTACTACGGGGCC
CGGACGGCTTCCGCCCTGGGACGCGATGTGCGGGCGTCGATCTTCGGCCGGGTGCAGTCGTTCTCCGCACGCGAGGTGGG
ACGGTTCGGGGCTCCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTCGTCCTGATGGCGTTCA
CCCTGATGGTGTCGGCGCCCATCATGTGTGTCGGCGGCGTCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCGGCGGTG
CTGCTGGCCGTGCTGCCCGTGCTCGGCATCTCGGTGAGCCTCATCGTGCGGAGGATGCGGCCGCTGTTCCGCACGATGCA
GGTGCGGCTGGACACGGTGAACCGTGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCATCCGTGACG
GCTACGAGGAGGAACGCTTCCGCCGCGCCAACACGGAGCTCACGGACGTCGCGGTGTCGACGGGGCGGCTGATGGCCCTG
ATGTTCCCGACGGTGATGACGGTCGTGAACCTGTCGTCCATCGCCGTGGTCTGGTTCGGGGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGGGCGCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATCATGGTGCCGCGTGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGCGTGGTTCCG
CCCACCGCTCCGGTCACGAAGCTGCTCAAACACGGCCATCTGGAGATACGGGGCGCGGAGTTCCGCTTCCCGGGTGCCGA
GGAGCCGGTGCTGCGCTCGGTCGATCTCGTGGCGCGGCCCGGGGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGCGACGGACGGCGATGTGCTCGTCGACGGTACGGACGTGCGG
ACGCTGGATCCGGTCCTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTATCTGTTCTCGGGGACGGTCGCGAC
GAATCTCCGCTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCCCTGGAGGTGGCGCAGGCGAAGGACTTCG
TGGAGCGGCTGGAACACGGGCTCGACGCACCGATCGCCCAGGGCGGCACCAATGTCTCCGGTGGCCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCAGCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCCGCGCTGCGCGCTGCGCTGTCCCGCGAGACGGCGGGGGCGACCGTCGTGACCGTGGCGCAGCGGGTCTCCACGATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGGACGGGCAGCCATCACGAGCTGATGGACGGCAAT
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.48

100

0.409