Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG448_RS21040 Genome accession   NZ_CP108609
Coordinates   4575827..4577560 (-) Length   577 a.a.
NCBI ID   WP_405555957.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01171     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4570827..4582560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG448_RS21030 (OG448_20995) - 4572509..4573705 (+) 1197 Protein_4137 RNA polymerase sigma factor -
  OG448_RS21035 (OG448_21000) rcrQ 4573899..4575827 (-) 1929 WP_405555955.1 ABC transporter ATP-binding protein Regulator
  OG448_RS21040 (OG448_21005) rcrP 4575827..4577560 (-) 1734 WP_405555957.1 ABC transporter ATP-binding protein Regulator
  OG448_RS21045 (OG448_21010) - 4577688..4579142 (-) 1455 WP_405555959.1 FGGY-family carbohydrate kinase -
  OG448_RS21050 (OG448_21015) - 4579239..4579547 (-) 309 WP_391291657.1 YtxH domain-containing protein -
  OG448_RS21070 (OG448_21035) - 4580130..4581167 (-) 1038 WP_405555961.1 TolB family protein -
  OG448_RS21075 (OG448_21040) - 4581164..4582441 (-) 1278 WP_405555963.1 MFS transporter -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62572.81 Da        Isoelectric Point: 5.9760

>NTDB_id=663897 OG448_RS21040 WP_405555957.1 4575827..4577560(-) (rcrP) [Streptomyces sp. NBC_01171]
MLIRLLRTCLRPYKKPIALLVVLQLLQTSATLYLPTLNAHIIDNGVVEGDTGYILTFGALMIGISLVQVVCNIGAVYFGA
RTASALGRDLRGAVFDRVQSFSSRELGHFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIVLALGLDVPLSAV
LIAVVPVLGICVMLIVRRLRPLFRSMQTRVDTVNRVLREQITGNRVIRAFVRDEYEHGRFGKANGDLTEMQLATGRMLAL
MFPMVMTVVNVSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PVAPVTELRGRGHLEIRNAGFRYPGAEEPVLRSIDLVARAGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVDVR
EADPALLARTVSLVPQKPYLFAGTVGSNLRYGKPDATDDELWAALETAQAKEFVERLEGGLEAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETADATVVIVAQRVATIRDADRIIVLDEGRVVGSGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=663897 OG448_RS21040 WP_405555957.1 4575827..4577560(-) (rcrP) [Streptomyces sp. NBC_01171]
GTGCTCATACGACTTCTGCGGACCTGTCTCAGGCCCTACAAGAAACCCATCGCCCTGCTGGTGGTGCTCCAGCTCCTCCA
GACCAGCGCCACGCTGTACCTGCCCACCCTCAACGCGCACATCATCGACAACGGTGTCGTGGAGGGTGACACGGGTTACA
TCCTGACGTTCGGCGCCCTGATGATCGGCATCTCGCTGGTCCAGGTCGTCTGCAACATCGGCGCCGTGTACTTCGGCGCC
CGTACCGCCTCCGCGCTCGGCCGGGACCTGCGTGGCGCGGTCTTCGACCGGGTGCAGTCCTTCTCCTCGCGGGAGCTCGG
CCACTTCGGCGCGCCGTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CACTGATGGTGTCGGCGCCCATCATGTGCGTCGGCGGCATCGTGCTGGCCCTCGGGCTGGACGTGCCGCTGTCCGCCGTG
CTGATCGCGGTGGTGCCGGTGCTGGGCATCTGCGTGATGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GACCCGGGTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
AGTACGAGCACGGGCGGTTCGGGAAGGCCAACGGCGATCTGACCGAGATGCAGCTCGCCACCGGCCGGATGCTGGCGCTG
ATGTTCCCGATGGTGATGACCGTGGTGAACGTGTCGTCCATCGCCGTGGTGTGGTTCGGCGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCCAGGAGGTGCTGGACACCGAGTCCAGCGTCGTGCCG
CCGGTGGCGCCGGTCACCGAGCTGCGCGGACGCGGACATCTGGAGATCCGGAACGCGGGCTTCCGCTATCCGGGGGCCGA
GGAGCCGGTGCTGCGCTCCATCGACCTGGTGGCGCGCGCGGGCGAGACCACGGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCGACCCTGCTCGGCCTGGTCCCCCGGCTGTTCGACGCCACCGAGGGCGAGGTCCTGGTGGACGGCGTGGACGTCCGC
GAGGCCGACCCGGCCCTGCTGGCCCGCACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCGCCGGCACCGTCGGCAG
CAACCTGCGCTACGGCAAGCCCGACGCCACCGACGACGAGCTGTGGGCCGCGCTGGAGACCGCGCAGGCCAAGGAGTTCG
TGGAGCGGCTCGAGGGCGGTCTCGAGGCGCCCATCTCACAGGGCGGCACCAATGTGTCGGGCGGTCAGCGCCAGCGCCTG
GCCATCGCCCGCACGCTGGTCCAGCGACCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCGCTGCGCGCGGCGCTCGGCCGGGAGACGGCGGACGCCACCGTGGTGATCGTGGCCCAGCGGGTGGCGACCATCC
GCGACGCGGACCGGATCATCGTGCTGGACGAGGGCCGGGTGGTGGGCTCCGGCCGCCACCACGAGCTGATGGCGGGCAAT
GAGACGTACCGGGAGATCGTGCTCTCCCAGTTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40

97.92

0.392