Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MNO09_RS10695 Genome accession   NZ_CP093325
Coordinates   1577806..1578585 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus sp. N5-665     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1572806..1583585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO09_RS10675 (MNO09_10595) trmFO 1573460..1574764 (+) 1305 WP_000211997.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MNO09_RS10680 (MNO09_10600) xerC 1574830..1575729 (+) 900 WP_001101249.1 tyrosine recombinase XerC -
  MNO09_RS10685 (MNO09_10605) hslV 1575772..1576314 (+) 543 WP_000526271.1 ATP-dependent protease proteolytic subunit HslV -
  MNO09_RS10690 (MNO09_10610) hslU 1576337..1577728 (+) 1392 WP_000550070.1 ATP-dependent protease ATPase subunit HslU -
  MNO09_RS10695 (MNO09_10615) codY 1577806..1578585 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MNO09_RS10700 (MNO09_10620) rpsB 1578935..1579636 (+) 702 WP_000111484.1 30S ribosomal protein S2 -
  MNO09_RS10705 (MNO09_10625) tsf 1579740..1580627 (+) 888 WP_001018585.1 translation elongation factor Ts -
  MNO09_RS10710 (MNO09_10630) pyrH 1580694..1581416 (+) 723 WP_000042667.1 UMP kinase -
  MNO09_RS10715 (MNO09_10635) frr 1581419..1581976 (+) 558 WP_000531506.1 ribosome recycling factor -
  MNO09_RS10720 (MNO09_10640) uppS 1582062..1582838 (+) 777 WP_000971311.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=663608 MNO09_RS10695 WP_000421290.1 1577806..1578585(+) (codY) [Bacillus sp. N5-665]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=663608 MNO09_RS10695 WP_000421290.1 1577806..1578585(+) (codY) [Bacillus sp. N5-665]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCGGAAGAATACACGCAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGCACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCAATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTTCGTAAATTAGAGAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGCATGAAAGGAACA
TACATTAAAGTGCTAAATGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459