Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MNO09_RS07825 Genome accession   NZ_CP093325
Coordinates   1053869..1056205 (+) Length   778 a.a.
NCBI ID   WP_000528064.1    Uniprot ID   -
Organism   Bacillus sp. N5-665     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1048869..1061205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO09_RS07805 (MNO09_07730) - 1050273..1050689 (+) 417 WP_000704116.1 Rrf2 family transcriptional regulator -
  MNO09_RS07810 (MNO09_07735) - 1050725..1051870 (+) 1146 WP_078182768.1 cysteine desulfurase family protein -
  MNO09_RS07815 (MNO09_07740) mnmA 1051887..1053002 (+) 1116 WP_078182767.1 tRNA 2-thiouridine(34) synthase MnmA -
  MNO09_RS07820 (MNO09_07745) - 1053113..1053772 (+) 660 WP_000066386.1 tetratricopeptide repeat protein -
  MNO09_RS07825 (MNO09_07750) recD2 1053869..1056205 (+) 2337 WP_000528064.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MNO09_RS07830 (MNO09_07755) - 1056333..1056521 (+) 189 WP_000469281.1 hypothetical protein -
  MNO09_RS07835 (MNO09_07760) - 1056540..1056668 (+) 129 WP_088107376.1 YrzQ family protein -
  MNO09_RS07840 (MNO09_07765) - 1056702..1056914 (-) 213 WP_000242555.1 hypothetical protein -
  MNO09_RS07845 (MNO09_07770) - 1057091..1058158 (+) 1068 WP_000793122.1 AI-2E family transporter -
  MNO09_RS07850 (MNO09_07775) - 1058197..1058541 (-) 345 WP_000209591.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87268.81 Da        Isoelectric Point: 5.3253

>NTDB_id=663600 MNO09_RS07825 WP_000528064.1 1053869..1056205(+) (recD2) [Bacillus sp. N5-665]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKNQLVRETMSLLNNQEGRVTEEDIVACVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGQIEEQLNVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIVYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=663600 MNO09_RS07825 WP_000528064.1 1053869..1056205(+) (recD2) [Bacillus sp. N5-665]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAGACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGGCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGATCATCTTGGGGAACATGCCATTTCTAAAATTATGGATG
ATCCGGATGCGTTAAATGGTGTTGTCAATAAGCAAAAAGCGCAAGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTTATTCGTAATAATCCATATAAGCTTATTGAAGAAGTGGATGGGATTGGATTTGGAAGAGCGGATGATA
TCGGACGGGCGTTAGGGATATCGGGTAATCATGATGACCGTGTACGTGCGGGTTGTTTTTATACGTTAGAGAATGTTTCA
TTGCAACTTGGTCATGTTTATATGGGGAAAAATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACCGAGGAAGACATTGTAGCTTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTTATCATAGAAGAAGAACGAGTGT
ATTTAGCATCGTTATTCTACTCAGAAAAAGGTGTTGTAAAGTCTATTCGCCGACTTATGAATCAAGAAGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTCAAATTGAAGAACAACTGAACGTACAGTATGCACCGCTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAGCCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAGACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCATCACTGCACGGATTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCCCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACGGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACGGATCCAGTACAAGGGAAATTGCTCATTATTGATGAGT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGACCTGGGCAAGTGTTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCTGTTATTCAACTCGCCCATGCTATAAAAAATGGAACGCTCCCGCCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GAAAATGCTAAGACAAAAGGGTTTAGCGCAAGGGATGTACAAGTACTGGCCCCGATGTACCGCGGACCTGCCGGTATTAA
TGTGTTAAACGAAGCGTTGCAAGAAGTGTTTAACCCGAAAAGGGAAAAGAGTAAAGAAATTGTTTACGGTGATGTTGTAT
ACCGACGAGGCGATAAAGTACTACAACTCGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAATGTTGAACAACAAGATATGATTATCGTTTCATTTGATGGAATTGAAGTAACGTATAC
AAAGCCAGACTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAGTCGCAAGGTAGTGAGTTCCCAATCGTAA
TTATGCCGATAGTAAAAAGTTACAATCGGATGTTACGTCGTAATTTAATTTATACTGGCATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGAGAGGAAGCCGCTTTCCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGCCAAACGACTTTAGC
TGGTCGTTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.764

100

0.577