Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG770_RS25420 Genome accession   NZ_CP108587
Coordinates   5684106..5685839 (-) Length   577 a.a.
NCBI ID   WP_405694988.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01185     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5679106..5690839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG770_RS25410 (OG770_25375) rpoS 5681062..5682138 (+) 1077 WP_329228639.1 RNA polymerase sigma factor Regulator
  OG770_RS25415 (OG770_25380) - 5682184..5684106 (-) 1923 WP_405694986.1 ABC transporter ATP-binding protein -
  OG770_RS25420 (OG770_25385) rcrP 5684106..5685839 (-) 1734 WP_405694988.1 ABC transporter ATP-binding protein Regulator
  OG770_RS25425 (OG770_25390) - 5685953..5687401 (-) 1449 WP_405694990.1 FGGY family carbohydrate kinase -
  OG770_RS25430 (OG770_25395) - 5687468..5687770 (-) 303 WP_376368607.1 YtxH domain-containing protein -
  OG770_RS25450 (OG770_25415) - 5688825..5689581 (-) 757 Protein_5010 transposase family protein -
  OG770_RS25455 (OG770_25420) - 5689653..5690639 (-) 987 WP_405694992.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62560.62 Da        Isoelectric Point: 5.3681

>NTDB_id=663518 OG770_RS25420 WP_405694988.1 5684106..5685839(-) (rcrP) [Streptomyces sp. NBC_01185]
MLIKLLRTYLGPYRQPIMLLVLFQLLQTCASLYLPSLNADIIDNGVVRGDTGYILQFGAVMIAVSVIQIVCNIGAVYYGA
RTASALGRDVRASVFGQVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGVIMALGQDVPLSAV
LLAVLPVLGISVSLIVRRMRPLFRTMQVRLDTVNRVLREQITGNRVIRAFIRDGYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFIMVPRAEVCAERIQEVLETESSVVP
PTAPVTKLLTHGHLEIRGAEFRYPGAEEPVLRSVDLAARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGEVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVERLEHGLDAPISQGGTNVSGGQRQRL
AIARTLVQKPEIYLFDDSFSALDYATDAALRGALSHETSGATVVIVAQRVSTIRDADRILVLDEGRVVGTGTHGELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=663518 OG770_RS25420 WP_405694988.1 5684106..5685839(-) (rcrP) [Streptomyces sp. NBC_01185]
GTGCTCATAAAACTCCTGCGGACCTATCTGGGTCCGTACAGACAGCCCATCATGCTGCTGGTGCTGTTCCAGCTCCTGCA
GACCTGCGCGAGCCTCTACCTGCCCAGCCTCAACGCGGACATCATCGACAACGGTGTCGTGCGGGGGGACACGGGTTACA
TCCTGCAGTTCGGCGCGGTGATGATCGCGGTCAGCGTCATCCAGATCGTCTGCAACATCGGGGCCGTCTACTACGGCGCC
CGGACCGCCTCCGCGCTCGGGCGCGACGTGCGGGCGTCGGTCTTCGGCCAGGTGCAGTCGTTCTCCGCGCGCGAGGTGGG
ACGGTTCGGGGCTCCTTCGCTGATCACCCGGACGACCAATGACGTGCAGCAGGTCCAGATGCTCGTCCTGATGGCGTTCA
CCCTGATGGTCTCGGCGCCCATCATGTGCGTCGGCGGCGTCATCATGGCGCTCGGCCAGGACGTCCCCCTGTCGGCGGTG
CTGCTGGCCGTGCTGCCCGTGCTCGGGATCTCGGTGAGCCTCATCGTGAGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGTGCGGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCATCCGTGACG
GCTACGAGGAGGAACGCTTCCGCGGCGCCAACACGGAGCTGACGGACGTCGCCCTGTCGACGGGCCGGCTGATGGCCCTC
ATGTTCCCGACCGTGATGACGGTGGTGAACCTGTCGTCCATCGCGGTGGTCTGGTTCGGTGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGGGCGCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTCATGGCGGTGATGATGGCCACCTTCA
TGTTCATCATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGCGTGGTGCCG
CCCACCGCCCCGGTCACGAAGCTGCTCACACACGGCCACCTGGAGATACGGGGCGCGGAGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGTTCCGTCGATCTCGCGGCTCGGCCCGGGGAGACGACCGCGATCATCGGCTCGACCGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTGCCGCGGCTGTTCGACGCGACGGACGGCGAGGTGCTCGTCGACGGTACGGACGTGAGG
ACGCTGGATCCGGTCCTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCGGGGACGGTCGCGAC
GAATCTGCGCTACGGCAATCCGGACGCGACCGACGAGGAACTGTGGCACGCCCTGGAGGTGGCGCAGGCGAAGGAGTTCG
TGGAGCGGCTGGAGCACGGCCTGGACGCGCCGATCTCACAGGGCGGCACCAATGTGTCCGGTGGCCAGCGGCAGCGGCTC
GCGATCGCGAGGACGCTGGTGCAGAAGCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACGGA
CGCCGCGCTGCGCGGCGCCCTGTCCCACGAGACGTCGGGGGCGACCGTGGTGATCGTGGCACAGCGGGTGTCCACGATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCAGGGTCGTCGGGACGGGCACGCACGGCGAGCTGATGGACGGCAAC
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.722

100

0.411