Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MM326_RS07640 Genome accession   NZ_CP093302
Coordinates   1412047..1414305 (+) Length   752 a.a.
NCBI ID   WP_099300335.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. LMS6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1407047..1419305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM326_RS07615 (MM326_07580) - 1407187..1408449 (-) 1263 WP_255225050.1 replication-associated recombination protein A -
  MM326_RS07620 (MM326_07585) - 1408636..1409055 (+) 420 WP_099300331.1 cysteine metabolism transcriptional regulator CymR -
  MM326_RS07625 (MM326_07590) - 1409071..1410228 (+) 1158 WP_099300332.1 cysteine desulfurase family protein -
  MM326_RS07630 (MM326_07595) mnmA 1410250..1411344 (+) 1095 WP_099300333.1 tRNA 2-thiouridine(34) synthase MnmA -
  MM326_RS07635 (MM326_07600) - 1411377..1412036 (+) 660 WP_099300334.1 lipopolysaccharide assembly protein LapB -
  MM326_RS07640 (MM326_07605) recD2 1412047..1414305 (+) 2259 WP_099300335.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MM326_RS07645 (MM326_07610) - 1414388..1414852 (+) 465 WP_255225356.1 PRC-barrel domain-containing protein -
  MM326_RS07650 (MM326_07615) - 1414864..1415055 (+) 192 WP_099300337.1 hypothetical protein -
  MM326_RS07655 (MM326_07620) - 1415076..1415264 (+) 189 WP_255225051.1 DUF3918 domain-containing protein -
  MM326_RS07660 (MM326_07625) - 1415393..1416469 (+) 1077 WP_099300339.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84577.69 Da        Isoelectric Point: 6.1969

>NTDB_id=663361 MM326_RS07640 WP_099300335.1 1412047..1414305(+) (recD2) [Alkalihalobacillus sp. LMS6]
MDVEETERYMKGQVTHVLFRNEENDYTVATVKIEKTNEQIEAKKTTIVGHLPELELEETYSFFGQVTEHPRFGTQYKVET
FKREMPKTKNGIIKFLSSDRFPGIGVKTAESIVNQLGERAISLIINDRNVLEQVPKLKKDNAEILHQRLLEHQGAEQVII
QLSQYGFGTELSMNVYRAYKLQALDIIRTNPYLLIKDVEGVGFRRADQLGAAIGLKGDHPERIRAGILYLINELSVQDGH
LYLYHAPFVEEVSKLLTTPNDPVSPEAVHEGLIQMDEEGFVITEQDRVYMKSLFYAERGIAQNIMRIKSYELKSEFTQAD
MEKTLGQLEEDHNVTYSVLQKEAIETALHSPIMLLTGGPGTGKTTVIKGIVGAYARLHGVNLDQQTGADKDARTAPLKLA
APTGRAAKRMAEATELPAGTIHSLLGWKGNATGFEKGDHDQLEGELLIVDEMSMVDAWVANQLFKAIPKGMQVILVGDEN
QLPSVGPGQVLKDLLDANVIPIVQLNEIYRQAEGSSIIELAHSMKDGHLPNDLTAKKPDLRFFSCHTNQVKQAVWQICEN
ALNKGYSSREIQVLAPIYRGGAGIIELNTMLQTLFNPAKEERREIPFGDVIFRKGDMVLQLVNNTEENVFNGDRGEIVAI
LYAKETTEKKDQLVVSFDGLEVTYEKKDFGQLTHAYCSSIHKAQGSEFPIVVMPVVGNYQRMLRRNLLYTGITRAKQFLL
LCGDLKTFEHAIHKHNDGRQSKLKERLQERMH

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=663361 MM326_RS07640 WP_099300335.1 1412047..1414305(+) (recD2) [Alkalihalobacillus sp. LMS6]
ATGGATGTTGAAGAAACCGAAAGATACATGAAAGGACAAGTCACTCATGTCTTGTTTCGAAATGAAGAAAACGACTATAC
CGTAGCAACGGTGAAAATTGAGAAGACAAATGAACAAATTGAAGCGAAAAAAACAACCATTGTCGGACATTTACCAGAGC
TGGAGTTAGAAGAAACGTATTCATTCTTCGGTCAAGTTACTGAACACCCTCGATTTGGCACACAATATAAAGTGGAAACA
TTTAAAAGAGAAATGCCGAAAACGAAAAATGGTATTATTAAATTTTTATCAAGTGATCGTTTTCCTGGGATTGGTGTTAA
GACGGCAGAGTCAATTGTAAATCAACTAGGGGAGCGGGCAATCTCATTAATTATTAACGATCGTAACGTTTTAGAGCAAG
TGCCTAAGCTGAAAAAAGACAACGCTGAAATTCTGCATCAACGCTTACTTGAACATCAAGGTGCAGAACAAGTCATTATC
CAATTGTCGCAATATGGATTTGGAACAGAGTTATCCATGAATGTTTACCGTGCCTACAAGCTTCAAGCTTTAGATATTAT
TCGAACCAATCCATATTTACTCATTAAAGATGTAGAAGGTGTAGGTTTCAGACGCGCAGACCAATTAGGAGCAGCCATTG
GTTTAAAAGGCGACCACCCGGAAAGAATACGAGCGGGTATCCTCTATCTTATAAATGAACTAAGTGTTCAAGACGGGCAT
CTATATTTATATCATGCCCCATTTGTTGAAGAAGTAAGTAAGCTGTTAACAACTCCAAATGACCCTGTTAGCCCTGAAGC
TGTTCACGAGGGTCTCATTCAAATGGATGAAGAAGGCTTTGTTATTACAGAACAAGATCGAGTTTATATGAAGTCACTTT
TTTATGCAGAGCGTGGTATTGCGCAAAATATAATGAGGATCAAATCGTATGAACTGAAATCAGAGTTCACACAAGCTGAT
ATGGAAAAAACGTTAGGACAGCTGGAAGAAGATCACAACGTAACGTATTCTGTTTTGCAAAAAGAAGCGATTGAGACCGC
TTTACATTCACCTATTATGCTGTTAACAGGTGGTCCGGGTACAGGGAAAACGACTGTTATAAAAGGAATTGTGGGAGCCT
ATGCCCGCTTGCATGGAGTGAATCTCGATCAACAAACAGGTGCAGACAAAGATGCGCGTACGGCTCCGCTTAAGTTGGCT
GCTCCAACTGGTCGCGCCGCTAAGCGTATGGCAGAAGCGACTGAGTTACCTGCTGGTACGATTCACAGTTTGCTTGGTTG
GAAAGGAAATGCCACGGGTTTTGAAAAAGGCGACCACGATCAATTAGAAGGCGAACTTTTGATAGTCGATGAAATGTCAA
TGGTGGACGCGTGGGTGGCGAATCAGCTGTTTAAAGCGATTCCTAAAGGCATGCAAGTTATTCTCGTTGGAGATGAAAAC
CAATTGCCATCTGTAGGACCTGGTCAAGTGTTAAAAGACTTACTGGATGCAAACGTCATCCCGATTGTTCAACTGAATGA
AATTTATCGACAAGCGGAAGGATCCTCCATCATTGAGCTAGCTCATTCCATGAAAGATGGCCATCTTCCTAACGATCTTA
CAGCCAAAAAGCCTGACTTGCGATTTTTTTCTTGTCATACGAACCAAGTAAAGCAAGCTGTTTGGCAAATTTGCGAAAAT
GCATTAAACAAAGGATATAGCTCTCGAGAAATACAGGTTTTAGCACCGATCTACCGTGGTGGTGCTGGAATTATTGAACT
AAATACGATGCTTCAGACGTTATTTAATCCTGCAAAAGAAGAACGTCGTGAAATTCCATTTGGAGACGTTATTTTTCGAA
AAGGAGATATGGTGCTTCAGCTCGTTAATAACACGGAAGAAAATGTGTTTAATGGGGACAGAGGAGAGATTGTCGCAATC
CTTTATGCAAAAGAGACGACAGAGAAAAAGGATCAGCTTGTTGTGTCTTTTGACGGTTTAGAAGTGACTTACGAGAAAAA
AGATTTTGGCCAGTTAACACATGCGTATTGTTCATCAATTCACAAAGCGCAAGGCAGTGAATTTCCAATCGTTGTCATGC
CGGTTGTAGGAAATTATCAACGCATGTTAAGAAGAAATTTACTTTATACAGGCATTACAAGAGCAAAGCAGTTTTTACTT
TTATGTGGGGATTTAAAAACATTTGAACACGCGATTCATAAGCATAATGATGGTCGACAATCGAAGTTAAAAGAACGTCT
GCAGGAACGCATGCACTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(587-657)

AAA domain (AAA_30)

(336-533)

Helix-hairpin-helix containing domain (HHH_RecD2)

(151-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.606

99.601

0.544