Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MM326_RS07540 Genome accession   NZ_CP093302
Coordinates   1390829..1393183 (+) Length   784 a.a.
NCBI ID   WP_255225043.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. LMS6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1385829..1398183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM326_RS07510 (MM326_07475) - 1385869..1386111 (+) 243 WP_099300313.1 hypothetical protein -
  MM326_RS07515 (MM326_07480) spoVB 1386157..1387698 (-) 1542 WP_255225042.1 stage V sporulation protein B -
  MM326_RS07520 (MM326_07485) - 1387879..1388181 (+) 303 WP_099300315.1 post-transcriptional regulator -
  MM326_RS07525 (MM326_07490) secD 1388199..1389503 (+) 1305 WP_176554188.1 protein translocase subunit SecD -
  MM326_RS07530 (MM326_07495) secF 1389493..1390434 (+) 942 WP_176554189.1 protein translocase subunit SecF -
  MM326_RS07535 (MM326_07500) - 1390456..1390764 (+) 309 WP_099300316.1 lipopolysaccharide assembly LapA domain-containing protein -
  MM326_RS07540 (MM326_07505) recJ 1390829..1393183 (+) 2355 WP_255225043.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MM326_RS07545 (MM326_07510) - 1393173..1393688 (+) 516 WP_099300318.1 adenine phosphoribosyltransferase -
  MM326_RS07550 (MM326_07515) - 1393817..1396009 (+) 2193 WP_099300319.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  MM326_RS07555 (MM326_07520) dtd 1396025..1396468 (+) 444 WP_255225044.1 D-aminoacyl-tRNA deacylase -
  MM326_RS07560 (MM326_07525) - 1396739..1397755 (+) 1017 WP_255225045.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 87168.38 Da        Isoelectric Point: 4.7424

>NTDB_id=663360 MM326_RS07540 WP_255225043.1 1390829..1393183(+) (recJ) [Alkalihalobacillus sp. LMS6]
MLQPHARWRILEQDTTIVNELANELNLSQVAARLLVNRGFTDSTTASEFLMTEEPAFIDPFLMKGMEAAVSRIKVAIEAN
ERILVFGDYDADGVSSTSVLLTALKLQGADCDYYIPNRFTEGYGPNNPALEWAKEQGFTLVITVDTGISAVEQADYAKNI
GLDFIITDHHEPPPVLPNSYATINPKQPGCDYPFKELAGVGVAFKVAHALLDRVPHELLDYAVIGTIADLVPLVGENRLL
AKKGLRAFQTSDKKGIQALKDVCGMTAAEVEADHIGFAVGPRLNAAGRLDSAVPAVELLLAKDEDEAKALALEIDGLNKE
RQKIVTDMSKEAIESVQQLEQIPEALIVAKEGWNAGVIGIVASRLVEKFYRPTIVMTIDPETGLAKGSARSIEGFDMFAE
LSKSRDILPHFGGHPMAAGMTLEADNISLLQERLIEQAKTGLAPEAFKPVTTIDLAVAIDDVSVKVLKEIETLAPFGVEN
TKPKVLIDEVKLADIKRIGSDSSHLKFQFAGEETTLDGIAFRKGDLYEQITPQANVSAVGTLSINEWNGRVKPQLIVDDV
AIKDWQLFDWRSLQLNRLASRLNELPADETIVVAFQEKTVKRCKDLNIIAHHVHDPLPSFAGKFIVILDVPSHREDLYGM
FSENEKPNRIYVVFSEEEESFFKTNPNRDQFKWYYAFLKKREHFPINDLKKLEAHKGWSSDTTSFMNQVFAELGFIEIDN
ERITIVKSPEKKALDESEAYQAKQEQAWLENELVYASYGQLRELFTKRIGSDASEKKETMVHGL

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=663360 MM326_RS07540 WP_255225043.1 1390829..1393183(+) (recJ) [Alkalihalobacillus sp. LMS6]
ATGTTGCAACCACATGCAAGGTGGCGCATTTTAGAGCAAGATACAACGATCGTAAATGAATTAGCAAATGAATTAAACCT
TTCCCAAGTCGCCGCAAGGCTTTTGGTTAATAGAGGCTTTACCGATTCTACTACGGCAAGCGAATTTTTAATGACAGAAG
AGCCTGCGTTTATCGACCCATTTTTAATGAAAGGGATGGAAGCAGCTGTTTCACGAATAAAAGTTGCGATAGAAGCAAAC
GAACGTATTTTAGTCTTTGGAGATTATGATGCGGATGGTGTGAGTTCTACTTCTGTCCTTCTGACCGCATTAAAACTACA
AGGAGCGGATTGCGACTACTATATTCCAAATCGGTTCACGGAAGGCTATGGTCCGAATAATCCAGCGCTTGAGTGGGCGA
AGGAGCAAGGATTTACTCTTGTCATTACAGTGGATACAGGAATCTCCGCTGTGGAGCAAGCGGATTATGCAAAAAACATT
GGGCTAGATTTTATTATTACAGATCACCATGAACCACCGCCTGTTTTGCCGAACAGCTACGCAACGATCAATCCGAAGCA
ACCAGGCTGTGACTATCCTTTCAAAGAATTAGCTGGGGTTGGCGTTGCCTTTAAAGTTGCGCATGCGTTACTAGATCGAG
TTCCTCACGAGCTCCTGGATTATGCCGTGATTGGCACCATTGCTGACCTTGTCCCACTCGTTGGGGAGAATCGTTTACTG
GCGAAAAAGGGACTTCGTGCGTTTCAAACATCGGACAAAAAAGGCATCCAAGCATTAAAAGATGTGTGCGGAATGACAGC
TGCTGAAGTAGAGGCAGACCACATTGGTTTTGCGGTTGGACCTAGACTGAATGCTGCTGGTCGGCTTGATTCTGCAGTCC
CTGCAGTTGAACTGTTATTAGCAAAAGACGAGGACGAAGCAAAGGCGCTGGCGTTAGAAATTGACGGTTTAAATAAAGAG
CGACAAAAGATTGTAACCGATATGTCCAAAGAAGCGATTGAGTCGGTTCAACAGCTCGAGCAAATTCCTGAAGCACTCAT
CGTTGCCAAAGAAGGCTGGAACGCTGGCGTCATTGGAATCGTTGCATCAAGACTCGTTGAAAAATTTTATCGGCCAACGA
TTGTGATGACTATCGATCCTGAAACAGGTCTAGCTAAAGGATCAGCACGCAGTATTGAAGGGTTTGATATGTTTGCGGAA
CTTTCAAAAAGTCGAGACATTCTGCCGCACTTTGGCGGGCATCCAATGGCGGCTGGTATGACGCTAGAAGCAGACAATAT
TTCGCTTTTACAAGAACGTTTAATTGAGCAAGCTAAAACAGGATTGGCGCCTGAAGCGTTTAAGCCAGTTACCACCATTG
ATTTAGCAGTTGCCATTGATGACGTATCGGTAAAGGTGCTAAAAGAAATTGAAACACTCGCTCCTTTTGGAGTTGAAAAT
ACAAAGCCAAAAGTGTTAATAGACGAAGTGAAACTTGCAGATATTAAGCGAATCGGTAGTGATTCCAGTCACTTGAAATT
TCAATTTGCAGGGGAAGAAACGACGTTGGACGGCATTGCATTTCGAAAAGGGGATTTGTACGAACAAATTACTCCGCAAG
CAAATGTCTCAGCTGTTGGGACACTTTCGATTAACGAATGGAACGGAAGAGTGAAGCCGCAGCTAATTGTTGATGATGTT
GCGATTAAAGACTGGCAATTGTTTGATTGGCGGAGTTTACAGTTAAATCGGTTGGCATCTAGATTAAATGAACTGCCAGC
AGATGAAACCATTGTCGTCGCTTTTCAAGAAAAGACGGTTAAACGCTGTAAAGACCTCAATATCATTGCGCATCATGTCC
ATGATCCTTTACCTTCTTTTGCAGGAAAATTCATTGTTATACTGGACGTCCCTTCTCATCGCGAAGATCTTTATGGAATG
TTTTCGGAGAACGAGAAGCCCAACAGAATTTATGTCGTCTTTTCTGAGGAAGAGGAGTCATTTTTTAAGACAAATCCTAA
TCGAGATCAATTTAAGTGGTATTATGCGTTTCTAAAAAAACGCGAACATTTTCCAATTAATGATTTAAAGAAATTAGAGG
CACATAAAGGTTGGTCATCTGACACTACGTCATTCATGAATCAAGTGTTTGCTGAATTAGGGTTTATTGAGATTGATAAC
GAGCGTATAACGATTGTGAAAAGCCCGGAAAAGAAAGCATTAGATGAATCAGAAGCTTATCAAGCAAAACAAGAACAAGC
TTGGTTAGAAAACGAACTTGTATATGCTTCCTATGGACAGCTAAGAGAATTATTTACAAAACGAATTGGAAGCGATGCTT
CAGAAAAGAAGGAGACGATGGTACATGGATTATAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(316-436)

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-765)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

48.669

100

0.49