Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MM300_RS15495 Genome accession   NZ_CP093301
Coordinates   3282297..3284609 (+) Length   770 a.a.
NCBI ID   WP_255241788.1    Uniprot ID   -
Organism   Evansella sp. LMS18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3277297..3289609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM300_RS15470 (MM300_15410) - 3278120..3278698 (+) 579 WP_255241783.1 YitT family protein -
  MM300_RS15475 (MM300_15415) - 3278682..3279101 (+) 420 WP_255241784.1 cysteine metabolism transcriptional regulator CymR -
  MM300_RS15480 (MM300_15420) - 3279225..3280364 (+) 1140 WP_255241785.1 cysteine desulfurase family protein -
  MM300_RS15485 (MM300_15425) mnmA 3280426..3281538 (+) 1113 WP_255241786.1 tRNA 2-thiouridine(34) synthase MnmA -
  MM300_RS15490 (MM300_15430) - 3281607..3282278 (+) 672 WP_255241787.1 tetratricopeptide repeat protein -
  MM300_RS15495 (MM300_15435) recD2 3282297..3284609 (+) 2313 WP_255241788.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MM300_RS15500 (MM300_15440) - 3284636..3285112 (+) 477 WP_255241789.1 PRC-barrel domain-containing protein -
  MM300_RS15505 (MM300_15445) - 3285128..3285319 (+) 192 WP_078597288.1 hypothetical protein -
  MM300_RS15510 (MM300_15450) - 3285384..3286457 (+) 1074 WP_255241790.1 AI-2E family transporter -
  MM300_RS15515 - 3286522..3286656 (+) 135 WP_255241791.1 hypothetical protein -
  MM300_RS15520 (MM300_15455) alaS 3286852..3289488 (+) 2637 WP_255241792.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 770 a.a.        Molecular weight: 86124.11 Da        Isoelectric Point: 4.7785

>NTDB_id=663340 MM300_RS15495 WP_255241788.1 3282297..3284609(+) (recD2) [Evansella sp. LMS18]
MADTPAQEEKNFIKGELAHLIYHNEESLYTVAKIKVSDSSQPVENKEATIVGIMPAPERDVAYLFHGHFTDHPRFGRQYK
VAQFKKVMPETEQGIILYLSSDRFPGIGRKTAEKIVGTLGKQAVSLIIQDKGVLEKIPGLKPEKAEEIYDTLLEDQGIEQ
VLVRLYEFGFGLQLAMKVYQTYKVQALDVIENNPYKMIEDVEGIGFGKADLIGRKQGLTGNHPDRIKAAILYTVNESSMN
EGHVYVKTEDMIEEAKELLEREGGEIITPLEIADQVIALGGEEKIIVEEKRVYLPSLYFAEQGIATNINRLIEQKKEQDV
FPDAEFLKALGKVEESLGISYAPSQQEAVKQALHSPVMILTGGPGTGKTTVIKGLVEVFGQLKGISVNPEDYDKKSTFPV
LMAAPTGRAAKRMSESTGLPASTIHRLLGFKGTEDDFDHDEHEQLEGELIILDEMSMVDTWLANQLFKAIPDNMQVIMVG
DEDQLPSVGPGQVLSDLLTSDRIPSVQLTDIYRQSEGSKIIEFSHDIKDGSLPETIDGASKDLRFFPCGQPQVPEVIRQI
CDRARNKGYTARDIQVLAPMYRGVAGVENLNEMLQSLFNPPSEQRREVTFGSSVYRVGDMVLQLINNPEENVFNGDRGEI
VAIFTEKENTDRELKVIISFDGTEVSYTKPDLSQITHAYCCSIHKSQGSEFPIVIMPVVKGYHRMLRKKLIYTGITRAKD
FLLLCGDWSALDYAVKNDKDLERHTTLKEKLTKDSMEEIYQHETNGVSPD

Nucleotide


Download         Length: 2313 bp        

>NTDB_id=663340 MM300_RS15495 WP_255241788.1 3282297..3284609(+) (recD2) [Evansella sp. LMS18]
ATGGCTGATACCCCCGCTCAAGAAGAGAAAAACTTTATAAAAGGCGAGCTGGCACATCTCATATACCATAATGAAGAGTC
TCTCTACACGGTGGCTAAAATAAAAGTTTCCGACTCTTCCCAGCCAGTGGAAAATAAAGAGGCGACCATTGTAGGAATTA
TGCCGGCTCCTGAGCGGGATGTTGCTTATCTTTTTCACGGCCATTTTACGGATCATCCCAGGTTTGGGCGCCAGTACAAA
GTAGCACAGTTCAAGAAAGTGATGCCTGAAACAGAACAGGGGATTATTCTGTATCTTTCCAGCGACCGTTTTCCCGGAAT
AGGGCGAAAAACGGCGGAGAAGATTGTTGGTACTCTCGGAAAGCAGGCCGTATCCCTGATTATCCAGGACAAAGGCGTGC
TGGAAAAGATTCCAGGTCTTAAGCCGGAAAAAGCAGAGGAAATTTATGATACGCTGCTAGAAGACCAGGGTATTGAGCAG
GTGCTTGTACGGCTTTACGAGTTCGGTTTTGGACTCCAGTTAGCTATGAAGGTTTACCAGACATATAAGGTTCAAGCACT
CGACGTAATAGAAAACAATCCCTACAAGATGATTGAGGACGTGGAGGGGATTGGTTTCGGAAAAGCCGATTTAATCGGCA
GGAAGCAGGGACTGACTGGCAACCATCCGGACAGGATTAAAGCGGCAATTCTATACACTGTCAACGAGAGTTCAATGAAC
GAAGGCCATGTATATGTGAAGACCGAAGACATGATTGAAGAGGCAAAAGAGCTGCTCGAACGTGAAGGGGGAGAAATCAT
TACTCCTCTTGAGATTGCTGATCAGGTCATAGCCCTCGGCGGGGAAGAGAAAATCATTGTGGAAGAAAAGAGAGTGTATT
TACCATCTCTATATTTCGCAGAGCAGGGTATCGCTACTAATATTAACCGGCTTATTGAACAGAAAAAAGAGCAGGATGTA
TTTCCGGATGCTGAATTTTTAAAGGCGCTGGGCAAGGTGGAAGAATCCCTGGGGATAAGTTATGCTCCTTCCCAGCAGGA
AGCGGTGAAACAGGCGCTTCATTCTCCTGTCATGATTCTGACAGGAGGCCCTGGTACTGGGAAAACTACTGTCATTAAAG
GACTTGTAGAGGTATTTGGCCAGCTTAAAGGAATCTCTGTAAATCCGGAAGATTATGATAAAAAATCAACGTTTCCTGTA
CTGATGGCTGCTCCTACAGGAAGAGCCGCCAAACGGATGAGTGAATCAACAGGGCTGCCTGCCTCAACGATTCACAGGCT
TCTGGGGTTTAAAGGAACCGAGGATGATTTCGACCATGATGAACATGAACAGCTTGAAGGGGAGCTTATTATCCTTGATG
AAATGTCCATGGTGGACACGTGGCTGGCGAACCAGCTTTTTAAAGCCATACCGGACAATATGCAGGTAATTATGGTAGGG
GACGAAGATCAGCTTCCTTCAGTAGGCCCTGGCCAGGTTCTCTCTGATTTGCTCACATCAGACAGGATCCCGTCTGTGCA
GCTCACAGATATTTACAGACAGTCTGAAGGATCCAAGATAATTGAATTTTCACATGACATAAAGGATGGCAGCCTTCCCG
AGACTATCGATGGAGCCAGCAAGGATCTTCGTTTCTTTCCGTGCGGCCAGCCGCAGGTGCCTGAAGTAATCCGGCAGATT
TGTGACAGAGCGAGAAATAAAGGATATACAGCCAGAGATATACAAGTGCTTGCTCCTATGTACAGAGGAGTTGCAGGTGT
GGAAAATCTGAATGAGATGCTCCAGTCCCTGTTTAACCCTCCTTCTGAACAGCGGCGGGAAGTGACTTTTGGCAGTTCTG
TCTACCGGGTGGGGGATATGGTGCTCCAGCTTATCAATAATCCGGAAGAAAATGTTTTTAACGGGGACAGGGGCGAAATA
GTAGCCATATTTACAGAAAAGGAAAATACCGATCGGGAACTCAAGGTCATCATATCTTTTGACGGTACAGAGGTTTCCTA
CACGAAGCCCGACTTATCACAGATCACCCATGCTTACTGCTGTTCCATACACAAATCCCAGGGAAGCGAGTTTCCAATTG
TAATTATGCCAGTGGTAAAAGGTTATCACCGAATGCTCAGAAAAAAACTTATCTATACAGGGATTACCAGGGCAAAGGAT
TTCCTTCTCCTTTGCGGGGACTGGAGTGCTCTGGATTACGCAGTAAAAAATGACAAAGACCTTGAAAGGCATACCACTTT
AAAAGAAAAACTCACTAAAGACTCTATGGAAGAGATATACCAGCATGAAACTAACGGTGTATCCCCAGACTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(590-656)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-725)

AAA domain (AAA_30)

(341-537)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.618

97.013

0.53