Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MM300_RS15420 Genome accession   NZ_CP093301
Coordinates   3264278..3266629 (+) Length   783 a.a.
NCBI ID   WP_255241775.1    Uniprot ID   -
Organism   Evansella sp. LMS18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3259278..3271629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM300_RS15400 (MM300_15340) secF 3260085..3261014 (+) 930 WP_255241771.1 protein translocase subunit SecF -
  MM300_RS15405 (MM300_15345) - 3261638..3262555 (-) 918 WP_255241772.1 nuclease-related domain-containing protein -
  MM300_RS15410 (MM300_15350) - 3262932..3263849 (+) 918 WP_255241773.1 cation diffusion facilitator family transporter -
  MM300_RS15415 (MM300_15355) - 3263849..3264202 (+) 354 WP_255241774.1 lipopolysaccharide assembly LapA domain-containing protein -
  MM300_RS15420 (MM300_15360) recJ 3264278..3266629 (+) 2352 WP_255241775.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MM300_RS15425 (MM300_15365) - 3266733..3267245 (+) 513 WP_255241776.1 adenine phosphoribosyltransferase -
  MM300_RS15430 (MM300_15370) - 3267513..3269693 (+) 2181 WP_303836231.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  MM300_RS15435 (MM300_15375) dtd 3269800..3270240 (+) 441 WP_255241778.1 D-aminoacyl-tRNA deacylase -
  MM300_RS15440 (MM300_15380) - 3270304..3270480 (+) 177 WP_255241779.1 hypothetical protein -

Sequence

Protein


Download         Length: 783 a.a.        Molecular weight: 87590.93 Da        Isoelectric Point: 4.7543

>NTDB_id=663339 MM300_RS15420 WP_255241775.1 3264278..3266629(+) (recJ) [Evansella sp. LMS18]
MLTSKARWKVSETDELKVNYFSEQLGLSKIASRFLVQRGFTEAETAKTFLNIDESCIHSPYLLKDMEKAIERIKEGIRNK
EKILIFGDYDADGVTSTSLMFLTLRELGAQVGYYVPNRFTEGYGPNEGAFRQAKEEGVSLIITVDTGISAVYEAEVAKDL
GIDLIITDHHEPPPEIPDAYAVINPKQEDCFYPNPNLAGVGVAGKTAHALLGGLPEQYLDLIAIGTIADLVPLTDENRFF
ASEGIRRLSKVQRPGLKALMDHCGINPQELTEESVGFGIGPRLNAAGRMDSADPAVQLLISEDMLEADELAVMIDDLNKE
RQKVVADIAEEAERQVEEQGLSSVIIVGNEGWNAGVIGIVASRLTEKYYRPSIVLSIDSETGLAKGSARSIEGFDMFRSL
SQCRDWLPHFGGHPMAAGLTMKTEHIQPLQKKMNEIAEATVQPEDWIRSLSVDLPVKLSEVTVEAIKDLQMMAPFGVGNP
SPKILLDGVNLSVLKKIGSKKDHLKVTFKESNNMVDGIGFRMGELYDEISPNAKASVVGKLSINEWNGHVKPQVIIEDMK
VDEWQLFDLRGLNDPWKQMEHLAPETVLVTMWNKESGEMAKKLPDNWEILQLPEGPEHTVTDLTKKNVLLFDLPGSMEDL
KELFQKHGKPGRIYAAFIHDKDHFFEMLPTRDHFKWFYAFLIKRKSFNLQENAESLSAHKGWPVTAVHFICKVFFELGFV
TINNGVVELKDNPEKKDLTESASYRRQLEQSDIEDKLFYSSNADLKQLFEGLLEETSFPVSAE

Nucleotide


Download         Length: 2352 bp        

>NTDB_id=663339 MM300_RS15420 WP_255241775.1 3264278..3266629(+) (recJ) [Evansella sp. LMS18]
ATGTTAACATCAAAGGCACGGTGGAAAGTTTCAGAGACTGATGAATTAAAAGTCAACTATTTTTCTGAACAGCTGGGGCT
TTCAAAAATAGCCTCCCGTTTTTTAGTGCAGAGAGGTTTTACGGAAGCGGAAACAGCTAAAACTTTTTTGAATATAGACG
AATCATGTATCCACAGCCCGTATTTGTTAAAAGATATGGAAAAAGCAATAGAGAGAATTAAAGAAGGCATTAGAAATAAA
GAAAAGATACTTATCTTTGGTGATTATGACGCAGATGGAGTAACGAGTACCTCTCTTATGTTTTTAACGCTCAGGGAGCT
TGGAGCTCAGGTAGGGTACTACGTTCCGAACCGGTTCACAGAAGGATATGGTCCGAATGAAGGTGCATTCAGGCAGGCGA
AAGAAGAGGGAGTTTCTCTTATTATAACGGTGGATACTGGTATTTCAGCAGTATATGAGGCAGAAGTTGCAAAAGATCTG
GGAATCGACCTGATTATCACAGACCACCATGAACCTCCTCCAGAGATTCCTGATGCCTATGCAGTCATTAACCCTAAGCA
GGAGGATTGCTTCTATCCTAACCCTAACCTCGCTGGTGTGGGAGTTGCCGGAAAGACAGCTCACGCCCTGCTTGGTGGTC
TTCCGGAACAATATCTGGATCTGATTGCCATTGGTACCATTGCAGATTTAGTGCCTTTAACGGATGAAAACAGATTTTTT
GCCTCCGAAGGTATCAGGAGACTGTCAAAGGTACAGCGCCCAGGTCTGAAAGCACTTATGGACCATTGCGGAATAAATCC
TCAGGAATTAACGGAGGAATCTGTCGGCTTTGGTATCGGCCCACGGCTGAACGCTGCAGGGAGAATGGACTCTGCTGATC
CGGCAGTACAGCTGTTGATCAGCGAAGATATGCTGGAAGCAGATGAGCTGGCTGTAATGATAGACGATTTAAATAAAGAA
CGGCAGAAGGTTGTTGCTGATATCGCTGAAGAAGCGGAGCGGCAAGTGGAGGAACAAGGCCTCTCTTCTGTCATTATTGT
TGGGAATGAAGGCTGGAACGCAGGCGTTATTGGAATTGTTGCAAGCAGACTGACCGAAAAGTATTACCGGCCGTCTATTG
TTCTGAGCATAGACAGTGAAACAGGGCTTGCAAAAGGCTCTGCAAGGAGCATTGAAGGATTTGATATGTTCAGGTCCCTG
TCCCAGTGCCGTGATTGGCTCCCACACTTCGGCGGGCACCCAATGGCCGCCGGGTTAACGATGAAAACAGAGCATATACA
GCCGCTGCAGAAAAAAATGAATGAAATAGCTGAAGCGACAGTTCAGCCTGAAGACTGGATAAGATCATTATCTGTGGATC
TCCCGGTAAAATTATCAGAAGTAACAGTGGAAGCAATAAAAGATTTACAAATGATGGCCCCATTTGGGGTAGGGAACCCC
TCACCTAAAATACTTCTCGATGGTGTGAATTTATCGGTTCTGAAAAAAATCGGGTCAAAAAAGGATCACCTTAAGGTAAC
GTTTAAAGAGAGTAATAACATGGTAGACGGAATCGGTTTCCGCATGGGCGAGCTTTATGATGAAATATCGCCTAATGCTA
AGGCCTCTGTTGTCGGGAAGTTATCGATTAATGAATGGAATGGCCATGTAAAACCACAGGTCATTATTGAAGATATGAAG
GTTGATGAATGGCAGCTCTTTGATTTAAGAGGGCTGAATGATCCCTGGAAGCAAATGGAACATCTTGCGCCTGAAACAGT
GCTAGTAACCATGTGGAATAAAGAATCCGGAGAAATGGCTAAAAAACTTCCTGATAACTGGGAAATTCTTCAGCTGCCGG
AAGGTCCAGAACATACAGTGACAGATCTTACGAAAAAGAATGTTTTACTGTTTGATTTACCCGGGAGTATGGAAGACCTG
AAAGAACTCTTCCAGAAGCACGGTAAACCAGGAAGGATTTATGCAGCATTCATACATGATAAAGATCACTTTTTTGAAAT
GCTCCCAACAAGAGATCACTTTAAGTGGTTCTACGCATTTTTAATTAAACGAAAGTCCTTTAATTTACAGGAGAATGCTG
AAAGTCTTTCTGCTCATAAAGGCTGGCCCGTAACGGCAGTTCATTTTATATGTAAGGTGTTTTTTGAACTGGGATTTGTT
ACAATAAACAATGGAGTTGTTGAGCTTAAAGATAACCCTGAAAAGAAGGATTTGACAGAATCAGCTTCATACAGGCGTCA
GCTTGAGCAGAGCGACATAGAAGACAAGCTGTTTTATTCATCCAATGCTGATCTGAAACAGCTCTTCGAAGGTCTGCTGG
AGGAAACTTCATTTCCTGTATCAGCGGAGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(316-436)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(565-769)

RecJ OB domain (RecJ_OB)

(452-558)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

49.679

99.489

0.494