Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG220_RS12115 Genome accession   NZ_CP108582
Coordinates   2694287..2696020 (+) Length   577 a.a.
NCBI ID   WP_326690527.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01187     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2689287..2701020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG220_RS12095 (OG220_12075) - 2689923..2690456 (+) 534 WP_326690530.1 hypothetical protein -
  OG220_RS12100 (OG220_12080) - 2690684..2691211 (+) 528 WP_326690529.1 hypothetical protein -
  OG220_RS12105 (OG220_12085) - 2691302..2692486 (-) 1185 WP_405807339.1 MalY/PatB family protein -
  OG220_RS12110 (OG220_12090) - 2692682..2694091 (+) 1410 WP_326690528.1 FGGY family carbohydrate kinase -
  OG220_RS12115 (OG220_12095) rcrP 2694287..2696020 (+) 1734 WP_326690527.1 ABC transporter ATP-binding protein Regulator
  OG220_RS12120 (OG220_12100) rcrQ 2696017..2697939 (+) 1923 WP_326690526.1 ABC transporter ATP-binding protein Regulator
  OG220_RS12125 (OG220_12105) - 2698134..2698940 (-) 807 WP_326690525.1 serine protease -
  OG220_RS12130 (OG220_12110) - 2699190..2700512 (-) 1323 WP_326690524.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 63008.15 Da        Isoelectric Point: 5.7296

>NTDB_id=663331 OG220_RS12115 WP_326690527.1 2694287..2696020(+) (rcrP) [Streptomyces sp. NBC_01187]
MLIRLLRARLRPYKQPIALLVLMQLIQTCATLYLPTLNADIIDHGVVKGDTGYILRYGSLMLAVSVVQVVCNIAAVFLGA
RTAAALGRDIRAHVFDRVQAFSAREVGQFGAPSLITRTTNDVLQVQMVTLMAFTLMVTAPIMCFGGIFMALGQDVPLSAV
LLGVVPVLGIAVGLIVRRMRPLFRTMQERLDNVNRVLREQITGVRVIRAFVKDEYERRRFHEANSGLTDVQLRTGQLMAL
MFPVVMTVVNISSVVVVWFGARRIDSGDIEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTDSSVVP
PADPVRTLRRHGQLELRGAGFGYPGAEVPVLHDISLLARPGETTAVIGSTGSGKSSLLGLVPRLFDATAGQVLVDGEDVR
TLDPDLLASTVGLVPQRPYLFSGTVASNLRYGRPEASDEELWQALEVAQAKDFVERMDGGLEAEISQGGSNVSGGQRQRL
AIARVLVHRPEIYLFDDSFSALDYATDAALRSALARETAEATVVIVAQRVSTIRDADRILVLDEGRVAGVGGHHELMEDN
ETYREIVLSQLTESEAS

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=663331 OG220_RS12115 WP_326690527.1 2694287..2696020(+) (rcrP) [Streptomyces sp. NBC_01187]
GTGCTGATCCGCCTTCTCCGCGCCCGGCTGCGCCCGTACAAGCAGCCGATCGCGCTTCTCGTACTGATGCAGCTCATACA
GACCTGCGCCACGCTCTACCTGCCCACGCTCAACGCCGACATCATCGACCACGGTGTCGTGAAGGGCGACACGGGCTACA
TCCTGCGCTACGGCAGCCTGATGCTGGCCGTCTCCGTGGTGCAGGTCGTCTGCAACATCGCCGCGGTGTTCCTCGGGGCC
CGCACCGCCGCCGCGCTGGGACGCGACATCCGCGCGCACGTCTTCGACCGGGTGCAGGCGTTCTCCGCCCGCGAGGTCGG
CCAGTTCGGGGCCCCGTCACTGATCACCCGCACCACCAATGACGTGCTCCAGGTGCAGATGGTGACGCTGATGGCCTTCA
CGCTGATGGTCACGGCGCCGATCATGTGCTTCGGCGGCATCTTCATGGCGCTCGGCCAGGACGTACCGCTCTCGGCCGTG
CTCCTGGGCGTGGTGCCCGTGCTGGGTATCGCGGTCGGTCTGATCGTCCGCCGTATGCGCCCGCTCTTCCGCACCATGCA
GGAGCGGCTGGACAACGTGAACCGGGTGCTGCGCGAGCAGATCACCGGTGTCCGTGTCATCCGCGCCTTCGTCAAGGACG
AGTACGAGCGCCGCCGCTTCCACGAGGCCAACAGCGGCCTGACCGATGTGCAGTTGCGCACCGGGCAGCTGATGGCGCTG
ATGTTCCCGGTCGTGATGACCGTCGTGAACATATCCAGCGTCGTCGTGGTCTGGTTCGGCGCGCGCCGTATCGACAGCGG
CGACATCGAGATCGGCGCCCTCACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCCCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAAGTGCTGGACACCGACTCCAGCGTCGTACCG
CCCGCGGACCCGGTGCGTACGCTGCGCCGGCACGGGCAACTGGAGCTGCGCGGGGCCGGGTTCGGATACCCCGGCGCCGA
GGTGCCCGTCCTCCACGACATAAGCCTGCTGGCGCGGCCGGGCGAGACCACGGCGGTCATCGGCTCGACCGGCAGCGGCA
AGTCCTCCCTGCTGGGCCTGGTGCCACGGCTGTTCGACGCGACGGCCGGGCAGGTCCTGGTGGACGGCGAGGACGTGCGC
ACCCTCGACCCCGACCTCCTCGCGAGCACGGTCGGGCTCGTGCCGCAGCGCCCGTACCTCTTCTCCGGCACCGTCGCCTC
CAACCTGCGCTACGGCCGCCCCGAGGCGAGCGACGAGGAGCTGTGGCAGGCCCTGGAGGTCGCCCAGGCCAAGGACTTCG
TCGAGCGGATGGACGGCGGGCTGGAGGCGGAGATCTCCCAGGGCGGCAGCAACGTCTCCGGCGGCCAGCGGCAGCGGCTG
GCGATAGCGCGAGTGCTGGTGCACCGGCCCGAGATCTACCTGTTCGACGACTCCTTCTCCGCGCTGGACTACGCGACCGA
CGCGGCCTTGCGCTCCGCGCTCGCCCGGGAGACGGCGGAGGCGACGGTCGTCATCGTCGCGCAGCGCGTGTCCACCATCC
GGGACGCCGACCGCATCCTCGTGCTCGACGAGGGCCGCGTCGCGGGCGTCGGGGGGCACCACGAGCTGATGGAGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACCGAAAGTGAGGCCTCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.587

100

0.399