Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MM271_RS08155 Genome accession   NZ_CP093300
Coordinates   1711468..1713750 (+) Length   760 a.a.
NCBI ID   WP_243532997.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. LMS39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1706468..1718750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM271_RS08130 (MM271_08130) - 1707320..1707955 (+) 636 WP_243534399.1 YitT family protein -
  MM271_RS08135 (MM271_08135) - 1707900..1708319 (+) 420 WP_243532989.1 Rrf2 family transcriptional regulator -
  MM271_RS08140 (MM271_08140) - 1708350..1709489 (+) 1140 WP_243532991.1 cysteine desulfurase family protein -
  MM271_RS08145 (MM271_08145) mnmA 1709511..1710611 (+) 1101 WP_243532993.1 tRNA 2-thiouridine(34) synthase MnmA -
  MM271_RS08150 (MM271_08150) - 1710792..1711454 (+) 663 WP_243532995.1 tetratricopeptide repeat protein -
  MM271_RS08155 (MM271_08155) recD2 1711468..1713750 (+) 2283 WP_243532997.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MM271_RS08160 (MM271_08160) - 1713810..1714283 (+) 474 WP_243532998.1 PRC-barrel domain-containing protein -
  MM271_RS08165 (MM271_08165) - 1714299..1714487 (+) 189 WP_243533000.1 hypothetical protein -
  MM271_RS08170 (MM271_08170) - 1714507..1714689 (+) 183 WP_243533002.1 hypothetical protein -
  MM271_RS08175 (MM271_08175) - 1714938..1716014 (+) 1077 WP_243533004.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 760 a.a.        Molecular weight: 85187.79 Da        Isoelectric Point: 5.3301

>NTDB_id=663275 MM271_RS08155 WP_243532997.1 1711468..1713750(+) (recD2) [Alkalihalobacillus sp. LMS39]
MSQQVPLHEDETSYIKGEVSHIIFHNPDNYYTVAQVFVLQSSEKLKEKTVPVVGILPTVEPNGVYIFSGDFAEHPRFGLQ
FKVNAFSRDVPRTAAGVIQFLSSDRFPGIGKKTAETVVEALGEKALSKILADRNVLQDVPKLPADKAAVLYNQLVEFQGV
EQLITELSQYGFGLELTMKIFQTYKEEALTIIRSSPYKLIHDVEGIGFKRADLLGEAIGLTGNHPDRIKAGCVYFLHELC
MQEGHVFLYKHDLCKEVSSMLSSETVVIEEAEVSTQLLALHEEDKIVMEEERVYLSSLFFAEKGIVTNVKRLINSEKDNE
YPESEFYKALGELEELEKMEYAPTQREAIKTAITSPAMILTGGPGTGKTTVIKGIVEVFAKLHGYSLEPKDYKKDEPFPV
LLVAPTGRAAKRMGEATGLPSLTIHRLLGWKGGNGGFERDEDSPLEGRLLIVDEVSMVDIWLANQLFKSIPDTMQVVLVG
DQDQLPSVGPGQVLRDFIDANVIPIVALTEIYRQAEGSSIIDLAHEIKSGTLPDNFHVQQKDRSFFPCSIPQVHQVIEKV
CSNAMKKGYSAKEIQVLAPMYRGVAGIEELNRKLQQLFNPKKDGRREIQFGDLIYRTGDIVLQLVNNPEEQVYNGDRGEI
VAIFYAKENTEKQDQVLVSFDGIEILYTRKDLIQLTHAYCTSIHKAQGSEFPIVIMPVVKGYHRMLRRNLIYTGVTRAKQ
FLILCGEIEAWEMAAKQQGDGERHSMLVDKLKQTVMEKAD

Nucleotide


Download         Length: 2283 bp        

>NTDB_id=663275 MM271_RS08155 WP_243532997.1 1711468..1713750(+) (recD2) [Alkalihalobacillus sp. LMS39]
ATGTCACAACAAGTTCCTTTGCATGAGGATGAGACTTCTTATATAAAAGGTGAAGTAAGTCATATTATTTTTCATAACCC
AGATAATTATTATACGGTCGCTCAAGTGTTTGTTTTGCAGTCCTCTGAAAAGCTAAAAGAAAAGACCGTGCCAGTCGTTG
GGATTCTGCCTACAGTAGAGCCGAATGGTGTTTATATTTTTAGTGGGGATTTTGCAGAACATCCACGCTTTGGGCTTCAG
TTTAAAGTCAATGCATTTTCAAGAGATGTTCCAAGAACTGCAGCTGGTGTCATTCAATTTTTGTCAAGCGATCGTTTTCC
TGGAATCGGGAAAAAAACAGCAGAAACCGTAGTCGAAGCGCTTGGAGAAAAAGCGTTATCGAAAATTTTAGCCGACCGCA
ATGTGCTTCAAGATGTTCCTAAATTGCCAGCAGACAAGGCGGCTGTTTTATATAATCAACTTGTTGAATTTCAAGGGGTT
GAACAATTAATTACCGAATTATCACAGTATGGTTTTGGTTTAGAATTGACGATGAAAATATTTCAAACGTATAAAGAAGA
GGCACTTACGATTATTCGCTCAAGTCCATACAAGCTTATTCATGATGTGGAAGGGATTGGATTTAAACGGGCTGATTTAT
TAGGGGAAGCGATTGGATTAACGGGAAATCATCCTGACCGAATTAAAGCAGGGTGTGTTTATTTTCTTCATGAGTTATGC
ATGCAAGAAGGTCATGTGTTTCTATACAAACATGATTTATGTAAAGAAGTAAGCTCCATGTTATCGTCTGAGACTGTTGT
GATCGAAGAGGCAGAGGTTTCCACACAATTACTTGCCTTACATGAAGAAGATAAAATAGTGATGGAAGAAGAGCGTGTCT
ACTTATCTTCATTATTTTTTGCGGAAAAAGGTATCGTCACAAACGTTAAACGATTAATAAACAGTGAAAAAGATAATGAA
TATCCTGAATCAGAGTTTTACAAGGCGTTAGGTGAACTTGAAGAGCTAGAAAAAATGGAGTATGCACCAACGCAAAGAGA
AGCGATAAAAACAGCGATTACGTCACCAGCAATGATTTTAACCGGTGGACCAGGAACTGGGAAAACAACAGTCATAAAAG
GAATTGTTGAAGTGTTTGCAAAGCTCCATGGTTATTCACTGGAACCAAAGGATTATAAAAAGGACGAGCCTTTCCCCGTG
TTACTTGTTGCTCCTACAGGAAGGGCGGCGAAACGAATGGGCGAAGCAACCGGATTACCTTCCCTTACCATTCATCGTTT
ATTAGGATGGAAAGGTGGCAATGGTGGTTTTGAACGTGATGAAGACAGTCCACTAGAAGGCCGTTTACTCATTGTTGATG
AAGTATCGATGGTCGATATTTGGTTAGCGAATCAATTATTTAAATCGATTCCTGATACGATGCAAGTTGTACTCGTAGGT
GACCAAGACCAGCTACCTTCTGTTGGTCCAGGACAAGTATTACGGGATTTTATTGATGCAAATGTCATTCCCATTGTTGC
TTTAACAGAGATTTATCGCCAGGCAGAAGGGTCGTCGATTATTGATTTAGCGCATGAAATTAAAAGTGGAACTCTTCCTG
ACAATTTTCATGTGCAACAAAAGGATCGAAGTTTTTTTCCATGTAGTATTCCGCAAGTTCACCAAGTCATTGAAAAAGTG
TGTTCAAATGCAATGAAAAAAGGCTATAGTGCTAAAGAGATTCAAGTGTTAGCCCCAATGTACCGGGGAGTGGCAGGAAT
TGAAGAACTAAACCGTAAGTTGCAGCAATTATTTAACCCGAAAAAAGACGGCAGACGAGAGATTCAATTTGGTGATCTGA
TTTACAGAACAGGTGATATTGTATTGCAGTTAGTAAACAATCCCGAAGAACAAGTGTATAATGGGGACCGGGGTGAAATT
GTCGCGATTTTTTATGCGAAAGAAAACACTGAGAAGCAAGACCAAGTTCTCGTTTCCTTTGATGGAATTGAGATTTTATA
TACGAGGAAAGATTTAATTCAACTTACCCATGCGTATTGTACATCAATTCATAAAGCGCAAGGAAGTGAATTCCCGATCG
TCATCATGCCTGTTGTAAAAGGATATCATCGGATGTTAAGAAGAAACCTTATTTATACAGGAGTAACAAGAGCAAAGCAA
TTTCTCATTTTGTGTGGTGAAATCGAGGCGTGGGAAATGGCAGCTAAACAACAAGGTGATGGTGAACGCCATTCGATGTT
AGTAGATAAGCTAAAACAAACAGTTATGGAAAAAGCAGACTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-725)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(590-660)

AAA domain (AAA_30)

(341-539)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.979

100

0.561