Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MM271_RS08050 Genome accession   NZ_CP093300
Coordinates   1687685..1690039 (+) Length   784 a.a.
NCBI ID   WP_243532961.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. LMS39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1682685..1695039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM271_RS08020 (MM271_08020) - 1682818..1683630 (+) 813 WP_243532949.1 DUF368 domain-containing protein -
  MM271_RS08025 (MM271_08025) - 1683648..1683947 (+) 300 WP_243532951.1 post-transcriptional regulator -
  MM271_RS08030 (MM271_08030) secD 1684076..1685380 (+) 1305 WP_243532952.1 protein translocase subunit SecD -
  MM271_RS08035 (MM271_08035) secF 1685370..1686308 (+) 939 WP_243532954.1 protein translocase subunit SecF -
  MM271_RS08040 (MM271_08040) - 1686399..1687292 (+) 894 WP_243532956.1 cation diffusion facilitator family transporter -
  MM271_RS08045 (MM271_08045) - 1687307..1687624 (+) 318 WP_243532959.1 lipopolysaccharide assembly LapA domain-containing protein -
  MM271_RS08050 (MM271_08050) recJ 1687685..1690039 (+) 2355 WP_243532961.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MM271_RS08055 (MM271_08055) - 1690039..1690551 (+) 513 WP_243532963.1 adenine phosphoribosyltransferase -
  MM271_RS08060 (MM271_08060) - 1690923..1693106 (+) 2184 WP_243532965.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  MM271_RS08065 (MM271_08065) dtd 1693119..1693562 (+) 444 WP_243532966.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88933.27 Da        Isoelectric Point: 5.1660

>NTDB_id=663274 MM271_RS08050 WP_243532961.1 1687685..1690039(+) (recJ) [Alkalihalobacillus sp. LMS39]
MLKSKARWKLESIDDRKVDELINDLHVPPLVASLLVKRGLDTVEAAEQFLHIDKKEYYDPFLLSGMEETVERIHRAIKNE
EKILVFGDYDADGVSSTTVMVYALQQLKANFDYYIPNRFTEGYGPNEKAFRLAKEQGYQLIVTVDTGISAVHEAEVAKEL
EIDFIVTDHHEAPPILPDAYAIVNPKKPGCTYPFKGLAGVGVAFKVAHALLKRVPVELLDIVVIGTIADLVPLVDENRLL
AKQGIQALQHSNRPGIRALKKVCNIEDQVLNAEHVGFAIGPRINAAGRLAHAAPAVELLTTSDAKEAFAIAEEIDQLNKE
RQSIVNEMTKEAIEIVENEFPISDNHVLLIGKEGWNPGVIGIVASRLVEKYYRPTIILSYDSETGKAKGSARSIEGFDMF
ENLSESRDILPHFGGHPMAAGLTMQIEDVDQLRQRLHAQAEAVLTSEDFIPSSHIDVVTSLDHISLDVIKQMEQLAPYGV
ANPTPKIMIKDVVVGQSRRIGSDENHLKLVFEQNNAKLDGIGFQLGHLYDEMTTNVTLSAVGTLSVNEWNGHSKPQFMLE
DIAIEEWQLFDWRNVKNVHEKVEQIPEDRRVLVTFSETTRAKLKLEQVSGTWISPSTAEQVECEHPFVVFLDLPLVEEEM
KQIFDYIKNPERIYTVFYHEESHYFTSSPSREQFKWYYSFLKKKGEFDIRKFGEQLAKHKGWSKNTVEWMTKVFFELEFV
TINNGIISLHPNPSKKDLLDSKTYRSKIEQASIENQFVYSSYYELKLWFDDMLSRQSTSKETVN

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=663274 MM271_RS08050 WP_243532961.1 1687685..1690039(+) (recJ) [Alkalihalobacillus sp. LMS39]
ATGTTGAAATCAAAAGCTAGATGGAAGCTAGAGTCAATAGATGATAGAAAAGTAGACGAACTCATTAACGATTTACACGT
ACCTCCACTTGTCGCCTCTCTGTTAGTTAAACGTGGGCTAGATACGGTGGAAGCAGCAGAACAGTTTTTACATATCGACA
AAAAGGAGTATTATGATCCATTTTTATTAAGTGGGATGGAAGAAACAGTAGAAAGAATTCATCGCGCAATTAAAAATGAG
GAAAAGATCCTTGTGTTTGGTGACTATGATGCTGATGGAGTTAGTAGTACTACTGTAATGGTGTATGCATTACAACAATT
AAAGGCCAATTTTGATTATTATATACCGAATCGTTTTACAGAAGGATATGGACCAAATGAAAAAGCGTTTCGCTTGGCAA
AGGAACAAGGTTATCAGTTAATCGTAACGGTTGATACAGGAATTTCGGCAGTTCATGAAGCAGAAGTTGCAAAAGAGCTG
GAGATTGATTTTATTGTAACTGACCATCATGAGGCACCTCCTATTTTGCCTGATGCTTATGCAATAGTAAATCCGAAAAA
GCCAGGGTGTACTTATCCGTTTAAAGGACTAGCTGGGGTCGGTGTCGCGTTCAAAGTGGCTCATGCTCTATTAAAACGCG
TTCCTGTTGAACTATTAGATATTGTCGTCATTGGTACTATAGCTGACTTAGTCCCATTAGTTGATGAAAATCGTTTGCTT
GCCAAACAAGGTATTCAAGCGTTACAGCATTCGAATCGTCCTGGTATCCGTGCATTAAAAAAAGTATGTAATATTGAAGA
CCAGGTGTTAAATGCAGAACATGTTGGGTTTGCGATTGGACCGAGAATTAATGCAGCAGGAAGATTAGCTCACGCTGCTC
CAGCAGTAGAGTTATTAACAACATCTGATGCAAAAGAGGCATTCGCCATTGCTGAAGAAATTGACCAATTAAATAAAGAA
CGTCAATCTATTGTAAATGAAATGACAAAAGAAGCCATTGAAATTGTAGAAAACGAGTTTCCGATTTCTGATAATCATGT
TCTTTTAATTGGAAAAGAAGGCTGGAATCCAGGCGTGATTGGGATTGTGGCATCAAGACTAGTCGAAAAATATTACCGAC
CTACAATAATCCTTAGTTATGATAGTGAAACAGGGAAAGCGAAAGGGTCTGCTAGAAGCATTGAAGGTTTCGATATGTTT
GAGAACTTATCGGAAAGCCGTGATATATTACCGCACTTTGGCGGGCATCCGATGGCAGCTGGTTTAACGATGCAAATAGA
GGATGTCGATCAGCTCCGGCAACGACTACATGCTCAAGCCGAAGCAGTCTTAACGAGTGAAGACTTTATTCCGTCTTCTC
ATATTGATGTTGTTACAAGTTTGGATCATATCTCGTTAGATGTCATAAAGCAAATGGAACAGCTTGCCCCATATGGTGTG
GCAAATCCGACACCAAAAATTATGATTAAAGATGTTGTTGTTGGACAAAGTCGTCGGATCGGAAGTGATGAAAACCATTT
GAAACTTGTGTTTGAACAAAACAATGCGAAGTTAGATGGTATTGGGTTTCAACTCGGTCATTTATATGATGAGATGACAA
CAAATGTGACATTATCAGCGGTAGGAACCTTGTCTGTGAACGAGTGGAATGGACATAGTAAACCACAGTTTATGCTTGAA
GATATTGCAATTGAAGAATGGCAGCTATTTGATTGGAGAAACGTGAAAAATGTACATGAAAAAGTCGAACAGATTCCAGA
AGATAGGCGCGTCCTAGTCACGTTTTCTGAAACAACACGTGCAAAATTAAAGCTAGAACAAGTATCGGGCACATGGATAA
GTCCATCTACAGCGGAGCAAGTTGAGTGTGAACATCCATTTGTTGTTTTTCTTGACTTGCCACTAGTTGAAGAAGAGATG
AAGCAGATTTTTGATTATATCAAAAATCCAGAAAGAATCTATACGGTATTTTATCATGAGGAAAGTCATTATTTTACGTC
GAGCCCAAGCAGGGAGCAATTTAAATGGTATTATTCCTTTTTAAAGAAAAAAGGTGAATTTGATATCCGCAAATTTGGCG
AGCAGCTCGCCAAACATAAAGGCTGGTCAAAAAACACGGTAGAATGGATGACAAAGGTGTTTTTTGAACTGGAATTTGTT
ACAATAAACAATGGAATTATTTCGCTACACCCAAACCCATCGAAAAAAGACTTACTTGATTCAAAAACATACCGAAGCAA
AATCGAACAAGCGAGTATTGAAAATCAATTTGTATATTCGTCTTATTATGAATTAAAACTTTGGTTTGATGATATGTTAA
GTAGACAAAGTACAAGCAAGGAGACGGTGAATTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(315-438)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

50

100

0.501