Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG519_RS10710 Genome accession   NZ_CP108580
Coordinates   2569746..2571968 (-) Length   740 a.a.
NCBI ID   WP_405581789.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01190     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2564746..2576968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG519_RS10690 (OG519_10665) - 2565363..2565998 (+) 636 WP_405581778.1 TetR/AcrR family transcriptional regulator -
  OG519_RS10695 (OG519_10670) - 2566029..2566952 (-) 924 WP_405581780.1 DedA family protein -
  OG519_RS10700 (OG519_10675) - 2567127..2567876 (-) 750 WP_405581783.1 SDR family NAD(P)-dependent oxidoreductase -
  OG519_RS10705 (OG519_10680) - 2568332..2569621 (-) 1290 WP_405581786.1 citrate synthase -
  OG519_RS10710 (OG519_10685) recD/recD2/recDB 2569746..2571968 (-) 2223 WP_405581789.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG519_RS10715 (OG519_10690) - 2572358..2573245 (-) 888 WP_405592622.1 sugar phosphate isomerase/epimerase family protein -
  OG519_RS10720 (OG519_10695) - 2573251..2574402 (-) 1152 WP_405581792.1 dihydrodipicolinate synthase family protein -
  OG519_RS10725 (OG519_10700) - 2574399..2575550 (-) 1152 WP_405581794.1 Gfo/Idh/MocA family protein -
  OG519_RS10730 (OG519_10705) - 2575842..2576927 (+) 1086 WP_405581797.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79818.08 Da        Isoelectric Point: 6.3608

>NTDB_id=663273 OG519_RS10710 WP_405581789.1 2569746..2571968(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01190]
MVETTHLSVLEGVLERITYANEDNGYTVARVDTGRGSADLLTVVGALLGAQPGESLRMHGHWGSHPQYGKQFTVENYTTV
LPATIQGIRRYLGSGLIKGIGPRIAERIVDHFGTDTLDVIETEPKRLVEVPGLGPKRTRLIAAAWDEQKAIKEVMVFLQG
VGVSTSIAVRIYKTYGDASISVVKNQPYRLAADVWGIGFLTADRLAQAVGIPHDSPERVKAGLQYALSQATDQGNCFLPQ
ERLIADSVKLLQVDIGLVIDCLGELADEEGVVREEVPAADGDHEPVKAVYLVPFHRAEISLAAQLLRLLRGPEDRLPAFG
EVDWEKALAWLTATTGTDLAPEQQQAVQLALTQKVAVLTGGPGCGKSFTVRSVVALALAKKAKVVLAAPTGRAAKRLAEL
TGADASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLRDL
LAAGSPVPSVRLTRVFRQAQQSGVVTNAHRINAGEQPVTQGLPDFFLFPEEDSEEAGRLTVDVVARRIPARFGLDPRRDV
QVLAPMHRGPAGAGALNGLLQQAVTPARPDLPERRFGGRTFRVGDKVTQIRNNYDKGANGVFNGTVGVVTALDSVEQKLT
VRTDEDEEIDYDFDELDELSHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRRAIGQAVR
TVSAGRRFTALDHRLSRGAE

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=663273 OG519_RS10710 WP_405581789.1 2569746..2571968(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01190]
ATGGTTGAGACGACGCACCTCTCCGTGCTCGAAGGTGTCCTGGAACGGATCACCTACGCCAACGAGGACAACGGCTACAC
GGTCGCCCGGGTGGACACCGGCCGCGGCTCCGCCGACCTGCTGACGGTGGTGGGCGCGCTGCTCGGCGCGCAGCCCGGTG
AATCCCTGCGGATGCACGGTCATTGGGGCTCCCATCCGCAGTACGGCAAACAGTTCACCGTGGAGAACTACACGACGGTG
CTGCCGGCCACGATCCAGGGCATCCGCCGCTACCTGGGGTCGGGGCTGATCAAGGGCATCGGTCCGCGGATCGCCGAGCG
CATCGTCGATCACTTCGGCACCGACACCCTCGATGTCATCGAGACCGAGCCGAAGCGCCTGGTGGAGGTCCCCGGACTCG
GTCCCAAGCGCACCCGGCTGATCGCCGCCGCCTGGGACGAGCAGAAGGCGATCAAGGAGGTGATGGTGTTTCTGCAAGGC
GTGGGTGTCTCCACGTCCATCGCCGTGCGGATCTACAAGACCTATGGCGACGCGTCCATCTCCGTGGTGAAGAACCAGCC
CTATCGGCTGGCCGCCGATGTCTGGGGCATCGGCTTCCTCACCGCCGACCGGCTGGCCCAGGCGGTAGGGATACCGCACG
ACAGTCCGGAGCGGGTCAAGGCCGGACTCCAGTACGCCCTCTCGCAGGCCACCGACCAGGGCAACTGCTTCCTGCCCCAG
GAGCGGCTGATCGCCGACTCGGTGAAGCTGCTCCAGGTGGACATCGGCCTGGTCATCGACTGCCTCGGTGAACTGGCCGA
CGAGGAAGGCGTGGTGCGGGAGGAGGTGCCGGCCGCCGACGGTGACCACGAACCGGTGAAAGCCGTCTATCTGGTGCCCT
TCCACCGCGCGGAGATATCGCTCGCCGCCCAGTTGCTGCGGCTGCTGCGCGGACCGGAGGATCGGCTGCCCGCGTTCGGG
GAGGTGGACTGGGAGAAGGCGCTGGCCTGGCTCACCGCCACGACCGGCACCGACCTGGCGCCCGAGCAGCAGCAGGCGGT
CCAACTGGCCCTGACTCAGAAGGTCGCGGTGCTGACCGGCGGTCCCGGCTGCGGCAAGTCCTTCACCGTGCGCTCGGTGG
TGGCCCTCGCCCTGGCGAAGAAGGCGAAGGTGGTGCTCGCGGCGCCGACCGGCCGCGCCGCCAAGCGGCTGGCGGAGCTG
ACCGGTGCCGACGCCTCCACCGTCCACCGGCTGCTGGAGCTCAAGCCGGGCGGTGACGCCGCGTACGACAGGGACCGGCC
GCTGGATGCCGATCTGGTGGTGGTCGACGAGGCGTCGATGCTCGATCTGCTGCTGGCCAACAAGCTGGTGAAGGCGGTGC
CGCCCGGCGCGCATCTGCTCTTCGTCGGGGATGTGGACCAGTTGCCGAGCGTCGGGGCGGGGGAGGTGCTGCGGGATCTG
CTGGCGGCCGGCAGCCCGGTCCCCTCGGTGCGGCTCACCCGGGTCTTCCGCCAGGCCCAGCAGTCCGGAGTGGTGACCAA
CGCGCACCGGATCAACGCCGGAGAGCAGCCGGTCACTCAGGGCCTGCCGGACTTCTTCCTCTTCCCCGAGGAGGACTCGG
AGGAGGCGGGCCGCCTCACCGTGGATGTGGTGGCCCGGCGGATCCCGGCCAGATTCGGCCTCGACCCGAGACGGGATGTG
CAGGTGCTCGCCCCGATGCACCGCGGGCCGGCCGGGGCCGGGGCGCTGAACGGACTGCTCCAGCAGGCGGTCACCCCCGC
TCGCCCCGATCTGCCCGAGCGCCGGTTCGGCGGCCGGACCTTCCGGGTCGGCGACAAGGTCACCCAGATCAGAAACAACT
ATGACAAAGGCGCCAACGGTGTCTTCAACGGCACGGTAGGGGTCGTTACCGCACTGGACAGCGTCGAACAGAAGCTGACC
GTGCGCACCGACGAGGACGAGGAGATCGACTACGACTTCGACGAGCTCGATGAGCTGTCCCATGCCTACGCGGTGACCAT
CCATCGCTCACAGGGGAGCGAGTATCCAGCCGTAGTGATTCCCGTCACCACCGGGGCCTGGATGATGCTTCAACGCAACC
TGCTCTACACGGCTGTGACCAGGGCGAAGAAGCTGGTTGTCCTGGTGGGCTCGCGGCGCGCCATCGGCCAGGCGGTGCGT
ACCGTCTCGGCCGGCAGACGCTTCACAGCACTCGACCACCGGCTCTCCCGGGGCGCAGAATAG

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(576-642)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-237)

Helix-hairpin-helix domain (HHH_5)

(97-144)

AAA domain (AAA_30)

(339-517)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-709)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.799

100

0.364