Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MM221_RS17385 Genome accession   NZ_CP093299
Coordinates   3686932..3689247 (+) Length   771 a.a.
NCBI ID   WP_255235499.1    Uniprot ID   -
Organism   Salipaludibacillus sp. LMS25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3681932..3694247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM221_RS17360 (MM221_17170) - 3682821..3683477 (+) 657 WP_255235495.1 YitT family protein -
  MM221_RS17365 (MM221_17175) - 3683461..3683880 (+) 420 WP_255235496.1 cysteine metabolism transcriptional regulator CymR -
  MM221_RS17370 (MM221_17180) - 3683907..3685058 (+) 1152 WP_255235497.1 cysteine desulfurase family protein -
  MM221_RS17375 (MM221_17185) mnmA 3685080..3686186 (+) 1107 WP_303660303.1 tRNA 2-thiouridine(34) synthase MnmA -
  MM221_RS17380 (MM221_17190) - 3686244..3686909 (+) 666 WP_255235498.1 tetratricopeptide repeat protein -
  MM221_RS17385 (MM221_17195) recD2 3686932..3689247 (+) 2316 WP_255235499.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MM221_RS17390 (MM221_17200) - 3689272..3689745 (+) 474 WP_255235500.1 PRC-barrel domain-containing protein -
  MM221_RS17395 (MM221_17205) - 3689772..3689960 (+) 189 WP_255235501.1 hypothetical protein -
  MM221_RS17400 (MM221_17210) - 3689985..3690179 (+) 195 WP_255235502.1 hypothetical protein -
  MM221_RS17405 (MM221_17215) - 3690355..3691434 (+) 1080 WP_255235503.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 86622.46 Da        Isoelectric Point: 5.0971

>NTDB_id=663255 MM221_RS17385 WP_255235499.1 3686932..3689247(+) (recD2) [Salipaludibacillus sp. LMS25]
MNHINEGHEDYIKGELLHLIFHNEESLYTVAKVRVNDASQKLVEKEMTVVGMMTEPEQEVMYEFKGAVSEHPRFGRQFKF
VQFKKVMPETEQGIILYLSSDRFPGIGRKTAQVIVEHLGVTCISKILENPSVLDEIRKLAKDKAQHVYKTLLEDQGIEQI
LLKLYEFGFGVQLAMKVYKAYQTEALEIIQKNPYRMVEDVEGIGFGRADLIGRKQGIIGNHPDRLKAAIHYVLHDESLSA
GHVYSKNETIVKEAKKLLEKDTYDDISPLDIANEVIALGEEGKIVVEGDKMFLPSLYFAEQGIVTNLRRLMASEADLDEF
PESEFLKALGKVEELLGITYASSQKEGIQQALQSPMLILTGGPGTGKTTVIKGLVEVFGMLKGISIEPEDYKRKKEPFPI
LMAAPTGRAAKRMSESTGLPASTIHRLLGYKGEDSTWFEKGEEEKLEGKIIIVDEMSMVDTWLANQLLRAIPDGMQVIFV
GDEDQLPSVGPGQVLADLLTSGRIPAVRLTDIYRQSEGSKIIEFSHQIKEGALPPSIDRSSNDLRFFPCEQPEVPNAVKQ
ICERAIDKGFSARDIQVLAPMYRGVAGVENLNDMLQTLFNPKSDKKKEIPFGDVVYRIGDMVLQLVNNPEENVFNGDRGE
IIAIKTEKEAGEKQTEIIISFDGEEVSYTRPDLTQITHAYCCSIHKSQGSEFPIVIMPVVRGYYRMLRKKLIYTGVTRAK
HFLLLCGSWESLQLAVETNTEESRQTTLKEKLTESPLEIEYTNESKGTMKD

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=663255 MM221_RS17385 WP_255235499.1 3686932..3689247(+) (recD2) [Salipaludibacillus sp. LMS25]
ATGAATCACATAAATGAAGGTCATGAGGATTATATTAAAGGTGAACTTCTTCATCTGATTTTTCATAATGAGGAGTCTCT
TTATACAGTAGCAAAGGTAAGAGTTAATGATGCGTCACAGAAACTGGTCGAAAAAGAGATGACAGTAGTGGGCATGATGA
CGGAGCCAGAACAAGAAGTCATGTACGAGTTTAAAGGTGCTGTCTCAGAACACCCACGATTTGGGCGACAATTCAAGTTT
GTACAGTTTAAAAAAGTGATGCCAGAAACAGAGCAAGGGATCATTTTATATTTATCTAGCGACCGTTTTCCAGGAATCGG
TCGTAAAACAGCTCAAGTGATCGTAGAGCATTTAGGTGTGACGTGTATTTCAAAAATTTTAGAGAACCCATCTGTATTAG
ATGAAATACGTAAGCTAGCAAAAGATAAAGCACAGCATGTGTATAAAACACTGTTAGAAGACCAAGGGATTGAGCAGATC
TTACTTAAGCTATATGAGTTTGGCTTCGGAGTTCAACTAGCTATGAAAGTTTATAAAGCATATCAGACCGAAGCTTTAGA
AATCATACAAAAAAACCCGTACCGTATGGTTGAAGATGTAGAAGGAATTGGGTTTGGGCGTGCTGACTTAATAGGCAGAA
AACAAGGGATTATCGGTAATCACCCTGATCGGCTAAAAGCGGCTATCCACTACGTTCTTCATGACGAATCTCTAAGTGCC
GGTCATGTTTATTCCAAAAATGAAACGATTGTGAAAGAAGCAAAGAAGCTCTTAGAAAAAGATACATATGACGATATCTC
TCCCTTAGATATTGCCAATGAAGTGATTGCCCTCGGTGAAGAAGGAAAAATAGTTGTTGAAGGGGACAAAATGTTTCTCC
CATCGTTGTATTTTGCAGAGCAAGGTATTGTCACTAATTTGCGGCGACTTATGGCGTCTGAAGCTGATTTAGATGAATTT
CCAGAATCAGAGTTTTTAAAAGCGTTAGGTAAAGTGGAAGAACTCCTTGGCATTACTTATGCTTCTTCTCAAAAAGAAGG
AATCCAGCAAGCGTTACAGTCGCCAATGCTAATATTAACCGGTGGGCCTGGCACTGGTAAAACGACCGTTATTAAAGGAT
TAGTTGAAGTGTTCGGCATGCTTAAAGGCATATCAATAGAGCCGGAAGATTATAAAAGAAAAAAAGAACCTTTTCCTATT
CTGATGGCAGCCCCTACCGGACGAGCCGCTAAACGTATGAGTGAATCGACGGGATTACCTGCCTCTACTATTCACCGTCT
GCTTGGTTATAAAGGAGAAGACAGTACATGGTTTGAAAAAGGTGAGGAAGAGAAGTTAGAAGGAAAAATAATCATCGTAG
ATGAAATGTCAATGGTGGATACATGGCTTGCAAATCAGTTGTTAAGAGCCATTCCAGACGGTATGCAAGTGATTTTTGTG
GGTGATGAAGATCAACTGCCTTCTGTTGGTCCAGGGCAAGTATTAGCAGATCTCCTTACATCTGGACGCATACCAGCTGT
TCGGCTGACAGATATTTATCGCCAGTCAGAAGGCTCTAAAATTATTGAATTTTCCCATCAAATTAAAGAAGGGGCCTTAC
CTCCCTCTATAGACCGCTCAAGTAATGATTTACGCTTTTTCCCATGTGAACAACCAGAAGTTCCTAATGCGGTTAAACAA
ATTTGTGAGCGGGCTATTGATAAAGGCTTTTCTGCTAGAGATATTCAAGTGCTAGCACCTATGTATCGTGGTGTGGCCGG
GGTGGAAAATTTAAATGATATGCTACAAACTTTATTCAATCCTAAGTCAGACAAAAAAAAGGAAATCCCATTCGGGGATG
TTGTGTATCGAATTGGGGATATGGTGTTACAGCTAGTTAATAACCCAGAAGAGAATGTATTTAATGGAGATAGAGGCGAA
ATTATCGCCATTAAAACGGAAAAAGAAGCCGGTGAGAAGCAAACAGAAATTATAATTTCTTTTGATGGTGAAGAGGTTAG
TTATACGCGTCCTGACTTAACACAAATAACGCATGCCTATTGCTGTTCGATTCACAAATCACAAGGGAGTGAATTCCCAA
TTGTTATCATGCCTGTTGTTCGAGGCTATTATCGGATGCTTAGAAAAAAATTAATTTATACGGGTGTGACACGGGCTAAA
CATTTTCTGCTTCTTTGTGGAAGTTGGGAGTCTTTGCAGCTAGCTGTGGAAACAAATACAGAAGAAAGTAGACAGACGAC
ATTAAAAGAAAAATTGACTGAATCACCATTGGAAATTGAATACACGAATGAATCAAAGGGGACGATGAAAGACTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

AAA domain (AAA_30)

(340-535)

Helix-hairpin-helix containing domain (HHH_RecD2)

(154-244)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-649)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.949

96.887

0.523